mRNA_H-elongata_contig71099.14772.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig71099.14772.1
Unique NamemRNA_H-elongata_contig71099.14772.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig71099.14772.1 vs. uniprot
Match: A0A6H5KB40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB40_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.870e-6
Identity = 50/127 (39.37%), Postives = 62/127 (48.82%), Query Frame = 1 
Query:  181 TSGKASSAVASA---------GVESVWRLLDALMKPTDDHEETAELLSVLGAPALADAVLDSEFALGG-AGGRVPGAPPHRDGGRGDENGIID--------------SSVRNRFPLTSAAVKRLRDL 489
            TSG AS++ A A         G  SVWRLLDA    ++ H E AELLSVLGAPALA AVL++E   G  + G++  A    D   G                     +  R RFPL +AAV+  R L
Sbjct:  279 TSGGASASTAKAAPRATPPTPGRSSVWRLLDAFSVASEAHGEKAELLSVLGAPALAVAVLEAEAVAGAKSAGKMAAAHGFGDAAGGGXXXXXXXXXXXXGRVGEEAHALARIRFPLATAAVEAFRRL 405
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71099.14772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KB40_9PHAE4.870e-639.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71099contigH-elongata_contig71099:859..1503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size647
Cds size645
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.6094437-CDS-H-elongata_contig71099:858..15031622931110.6094437-CDS-H-elongata_contig71099:858..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71099 859..1503 +
1691679702.3614388-CDS-H-elongata_contig71099:858..15031691679702.3614388-CDS-H-elongata_contig71099:858..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig71099 859..1503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71099.14772.1prot_H-elongata_contig71099.14772.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig71099 859..1503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig71099.14772.1

>prot_H-elongata_contig71099.14772.1 ID=prot_H-elongata_contig71099.14772.1|Name=mRNA_H-elongata_contig71099.14772.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
SSKSAVEARAAGWTGDREGRSLPLLRVIAVDFIVSLVRLEAASVVEHGEQ
QHATVGCRRSTSGKASSAVASAGVESVWRLLDALMKPTDDHEETAELLSV
LGAPALADAVLDSEFALGGAGGRVPGAPPHRDGGRGDENGIIDSSVRNRF
PLTSAAVKRLRDLSRLHLPSSSPRAPASARISEAVASGLVSYAAAAFRRC
SSYREGDSSSGDARG
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mRNA from alignment at H-elongata_contig71099:859..1503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig71099.14772.1 ID=mRNA_H-elongata_contig71099.14772.1|Name=mRNA_H-elongata_contig71099.14772.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig71099:859..1503+ (Himanthalia elongata Himel1 dioecious)
TCCTCCAAGTCGGCGGTCGAAGCGCGAGCGGCCGGTTGGACTGGCGACCG
GGAAGGCAGATCCCTCCCGCTCTTGCGCGTGATTGCGGTGGATTTCATCG
TGTCTCTCGTGCGTCTTGAGGCGGCGTCGGTGGTAGAGCACGGCGAGCAG
CAGCACGCGACAGTGGGTTGTCGTCGGTCGACTTCCGGAAAAGCCTCCTC
CGCAGTGGCCTCGGCTGGAGTAGAATCCGTGTGGCGCCTGCTGGATGCGC
TAATGAAACCGACGGACGACCACGAAGAAACGGCGGAGCTACTGTCGGTC
CTCGGTGCGCCGGCACTGGCGGACGCTGTGCTGGACTCAGAGTTCGCCTT
GGGGGGAGCGGGAGGACGGGTGCCGGGAGCCCCCCCACACCGTGACGGTG
GCAGGGGCGATGAAAACGGCATCATTGATTCGTCGGTAAGGAACCGCTTC
CCGCTCACGTCCGCCGCCGTGAAGCGGCTCCGGGATCTCTCTCGTCTGCA
TCTCCCCTCGTCTTCTCCGCGGGCGCCCGCCTCCGCGCGGATATCGGAGG
CCGTAGCTTCGGGACTCGTGAGCTACGCGGCCGCCGCGTTCCGGAGGTGT
TCGTCCTACCGCGAAGGCGACAGTAGCAGCGGCGATGCGCGTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig71099:859..1503+

>mRNA_H-elongata_contig71099.14772.1 ID=mRNA_H-elongata_contig71099.14772.1|Name=mRNA_H-elongata_contig71099.14772.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig71099:859..1503+ (Himanthalia elongata Himel1 dioecious)
TCCTCCAAGTCGGCGGTCGAAGCGCGAGCGGCCGGTTGGACTGGCGACCG
GGAAGGCAGATCCCTCCCGCTCTTGCGCGTGATTGCGGTGGATTTCATCG
TGTCTCTCGTGCGTCTTGAGGCGGCGTCGGTGGTAGAGCACGGCGAGCAG
CAGCACGCGACAGTGGGTTGTCGTCGGTCGACTTCCGGAAAAGCCTCCTC
CGCAGTGGCCTCGGCTGGAGTAGAATCCGTGTGGCGCCTGCTGGATGCGC
TAATGAAACCGACGGACGACCACGAAGAAACGGCGGAGCTACTGTCGGTC
CTCGGTGCGCCGGCACTGGCGGACGCTGTGCTGGACTCAGAGTTCGCCTT
GGGGGGAGCGGGAGGACGGGTGCCGGGAGCCCCCCCACACCGTGACGGTG
GCAGGGGCGATGAAAACGGCATCATTGATTCGTCGGTAAGGAACCGCTTC
CCGCTCACGTCCGCCGCCGTGAAGCGGCTCCGGGATCTCTCTCGTCTGCA
TCTCCCCTCGTCTTCTCCGCGGGCGCCCGCCTCCGCGCGGATATCGGAGG
CCGTAGCTTCGGGACTCGTGAGCTACGCGGCCGCCGCGTTCCGGAGGTGT
TCGTCCTACCGCGAAGGCGACAGTAGCAGCGGCGATGCGCGTGGGTCCTC
CAAGTCGGCGGTCGAAGCGCGAGCGGCCGGTTGGACTGGCGACCGGGAAG
GCAGATCCCTCCCGCTCTTGCGCGTGATTGCGGTGGATTTCATCGTGTCT
CTCGTGCGTCTTGAGGCGGCGTCGGTGGTAGAGCACGGCGAGCAGCAGCA
CGCGACAGTGGGTTGTCGTCGGTCGACTTCCGGAAAAGCCTCCTCCGCAG
TGGCCTCGGCTGGAGTAGAATCCGTGTGGCGCCTGCTGGATGCGCTAATG
AAACCGACGGACGACCACGAAGAAACGGCGGAGCTACTGTCGGTCCTCGG
TGCGCCGGCACTGGCGGACGCTGTGCTGGACTCAGAGTTCGCCTTGGGGG
GAGCGGGAGGACGGGTGCCGGGAGCCCCCCCACACCGTGACGGTGGCAGG
GGCGATGAAAACGGCATCATTGATTCGTCGGTAAGGAACCGCTTCCCGCT
CACGTCCGCCGCCGTGAAGCGGCTCCGGGATCTCTCTCGTCTGCATCTCC
CCTCGTCTTCTCCGCGGGCGCCCGCCTCCGCGCGGATATCGGAGGCCGTA
GCTTCGGGACTCGTGAGCTACGCGGCCGCCGCGTTCCGGAGGTGTTCGTC
CTACCGCGAAGGCGACAGTAGCAGCGGCGATGCGCGTGGG
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