prot_H-elongata_contig71040.14767.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig71040.14767.1
Unique Name	prot_H-elongata_contig71040.14767.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	231

Homology

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BLAST of mRNA_H-elongata_contig71040.14767.1 vs. uniprot
Match: A0A6H5JLQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ8_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.280e-51
Identity = 127/250 (50.80%), Postives = 151/250 (60.40%), Query Frame = 0

Query:    1 VRQWPARAAGSLVLGAVLGGGAIYHILSRSAASSVSSCSGVEDTSPWWHSGGNGNGQYCDSTVAS-EQQVFVERLNKALFAARAGEAAAQQGLLEEVRNILAATGESGGISAERILRQFNAKRFAEASKAWSTAEG-IAGADPLDPLFFAPPSTPIYKTNPSSSSHQYHGSSFPGTA----ECSNGA----YCSPDGVEGGFGTPRGYQGNGGGDSAGSEGSAS----------GRRFNRRPCAGGGWVC 230
            VR W  R A S+V+G VLG  A +  L  +     S C+G + TSPWW +GG G     DS  A    Q F +RL+KALFAARAGEAAAQQGLLE++RNILAATGESGGISAE+ILRQFNAKRF EASKAWS AEG +AG+DPLDPLFFAPP+ P+  +  +S   Q   SS P  A    +C+ GA    +CS D      G           DS  +  + S          GR+  RR C GGGWVC
Sbjct:  404 VRVWLGRVALSIVVGIVLGSAATFCALRAATTKMGSVCAGADATSPWWSTGGAG-----DSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLLEDMRNILAATGESGGISAEQILRQFNAKRFKEASKAWSAAEGNVAGSDPLDPLFFAPPTAPVNPSASASQQPQPSSSSIPHGATPATDCAGGASGSTFCSAD-----SGXXXXXX-----DSVRANMAESVRRVKGFRDGGRQEYRRHCGGGGWVC 638

[Close]

BLAST of mRNA_H-elongata_contig71040.14767.1 vs. uniprot
Match: D7G052_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G052_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 4.810e-51
Identity = 118/234 (50.43%), Postives = 141/234 (60.26%), Query Frame = 0

Query:   17 VLGGGAIYHILSRSAASSVSSCSGVEDTSPWWHSGGNGNGQYCDSTVAS-EQQVFVERLNKALFAARAGEAAAQQGLLEEVRNILAATGESGGISAERILRQFNAKRFAEASKAWSTAEG-IAGADPLDPLFFAPPSTPIYKTNPSSSSHQYHGSSFPGTA----ECSNGA----YCSPDGVEGGFGTPRGYQGNGGGDSAGSEGSAS----------GRRFNRRPCAGGGWVC 230
            +LG  A +  L  +   + S C+G + TSPWW +GG G     DS  A    Q F +RL+KALFAARAGEAAAQQGLLE++RNILAATGESGGISAE+ILRQFNAKRF EASKAWS AEG +AG+DPLDPLFFAPP+ P+  +  SS   Q   SS P  A    +C+ GA    +CS D                  DS  +  + S          GR+  RR C GGGWVC
Sbjct:    1 MLGSAATFCALRAATTKTGSVCAGADATSPWWSTGGAG-----DSVGAGGADQSFGDRLDKALFAARAGEAAAQQGLLEDMRNILAATGESGGISAEQILRQFNAKRFKEASKAWSAAEGNVAGSDPLDPLFFAPPTAPVNPSASSSQQPQPSSSSVPHGATPATDCAGGASGSAFCSADSXXXXXXXXX--------DSVRANMAESVRRAKGFRDGGRQEYRRHCGGGGWVC 221

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig71040.14767.1 vs. uniprot

BLAST of mRNA_H-elongata_contig71040.14767.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JLQ8_9PHAE	3.280e-51	50.80	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G052_ECTSI	4.810e-51	50.43	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 28..230
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig71040	contig	H-elongata_contig71040:3..1170 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig71040.14767.1	mRNA_H-elongata_contig71040.14767.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig71040 3..1170 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig71040.14767.1 ID=prot_H-elongata_contig71040.14767.1|Name=mRNA_H-elongata_contig71040.14767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp
VRQWPARAAGSLVLGAVLGGGAIYHILSRSAASSVSSCSGVEDTSPWWHS
GGNGNGQYCDSTVASEQQVFVERLNKALFAARAGEAAAQQGLLEEVRNIL
AATGESGGISAERILRQFNAKRFAEASKAWSTAEGIAGADPLDPLFFAPP
STPIYKTNPSSSSHQYHGSSFPGTAECSNGAYCSPDGVEGGFGTPRGYQG
NGGGDSAGSEGSASGRRFNRRPCAGGGWVC*