prot_H-elongata_contig70929.14750.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig70929.14750.1
Unique Nameprot_H-elongata_contig70929.14750.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length329
Homology
BLAST of mRNA_H-elongata_contig70929.14750.1 vs. uniprot
Match: A0A6H5LDY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDY4_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 5.040e-62
Identity = 156/366 (42.62%), Postives = 194/366 (53.01%), Query Frame = 0
Query:    9 VPFWYRETRLQRYQKTYRIVDNGPDSYTLMEKSIMTSCVCTVGTRYPDVAAQIFTAKDVLTLEEYRLFQMVVRRGAEVHKAASKSGKRAPRPMKIRLWFDRGALCLTSKRDRANRGYTVDHTFYMSKVKFCLLAPGRAAGRGIGQGSRRFGENHDSKRDAW---------------------AWTWGGGDLGDYYTTANSDLRDGDDQRSVVSVGEPSKMPGEESHHGGGLERAGEEGLAGVAKCSRDSVSS-----NESSAMSFRDEADRGAGGGDC------------------VAFEVMSNASSELLAPPSSGKGFAMPRR-VLSIHVLGRSTPLQLWFPDEAEATIWQGMLTKLAWKEQGYL 329
            VPFW+RET L+ YQK YRIVD+G DSYT ME+SIMTSCVCTVGT+Y DVAAQ+FTAK+VL  EEYRLFQ++V+RGAEV KAA KSG+R   PMK+RLWF+RGALCLT+KR + +   + DH+FY+SKVK CL+A   AA R  G  SRR   NH S                          A   G G+ G   T+A S         S+     P  +PG                 AG A               E++A    DEADRGA                        A     +   +  +   +G+ ++  +  V+SIH  GR+  L LWF  E EA  WQG+LTKL+WKEQGYL
Sbjct:  547 VPFWFRETNLRPYQKAYRIVDDG-DSYTPMERSIMTSCVCTVGTKYADVAAQLFTAKEVLFPEEYRLFQVLVKRGAEVPKAAPKSGRRLSHPMKLRLWFNRGALCLTAKRSKPDGTASKDHSFYLSKVKTCLVAV-TAAVRDSGGSSRRGSRNHCSSXXXXXGSGHSDAAITPRLPSDASDNASPAGRGNKGGLTTSATSSPLALSLSSSLPFSVPPKHLPG----------------AAGTAXXXXXXXXXXXXXLEENTA---HDEADRGAXXXXXXXXXXXXXXXXXXXXXXXAAKGQRPDGDGDASSVVKAGEDWSSQQACVMSIHFFGRTITLDLWFASETEAVEWQGLLTKLSWKEQGYL 891          
BLAST of mRNA_H-elongata_contig70929.14750.1 vs. uniprot
Match: D7FIV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV6_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 1.450e-47
Identity = 127/321 (39.56%), Postives = 150/321 (46.73%), Query Frame = 0
Query:    9 VPFWYRETRLQRYQKTYRIVDNGPDSYTLMEKSIMTSCVCTVGTRYPDVAAQIFTAKDVLTLEEYRLFQMVVRRGAEVHKAASKSGKRAPRPMKIRLWFDRGALCLTSKRDRANRGYTVDHTFYMSKVKFCLLAPGRAAGRGIGQGSRRFGENHDSKRDAWAWTWGGGDLGDYYTTANSDLRDGDDQRSVVSVGEPSKMPGEESHHGGGLERAGEEGLAGVAKCSRDSVSSNESSAMSFRDEADRGAGGGDCVAFEVMSNASSELLAPPSSGKGFAMPRRVLSIHVLGRSTPLQLWFPDEAEATIWQGMLTKLAWKEQGYL 329
            VPFW+RET L+ YQK YRIVD+G DSYT ME+SIMTSCVCTVGT+Y DVAAQ+FTAKDVL+ EEYRLFQ++V+RGAEV KAA KSG++   PMK+RLWF+RGALCLT+K                         PG A     G  SRR     ++     A    GG                                        G+ RAGE+  +  A                             CV                            +SIH  GR+  L LWF  E EA  WQGMLTKL+WKEQGYL
Sbjct:  426 VPFWFRETNLRPYQKAYRIVDDG-DSYTPMERSIMTSCVCTVGTKYADVAAQLFTAKDVLSPEEYRLFQVLVKRGAEVPKAAPKSGRKLSHPMKLRLWFNRGALCLTAKH-----------------------LPGAAGAAAAG--SRRGSSLEENTAHDEADRGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGVVRAGEDWSSQHA-----------------------------CV----------------------------MSIHFFGRTITLDLWFASETEAVEWQGMLTKLSWKEQGYL 663          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70929.14750.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDY4_9PHAE5.040e-6242.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV6_ECTSI1.450e-4739.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70929contigH-elongata_contig70929:99..2445 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70929.14750.1mRNA_H-elongata_contig70929.14750.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig70929 99..2445 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig70929.14750.1 ID=prot_H-elongata_contig70929.14750.1|Name=mRNA_H-elongata_contig70929.14750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=329bp
MLNRATQPVPFWYRETRLQRYQKTYRIVDNGPDSYTLMEKSIMTSCVCTV
GTRYPDVAAQIFTAKDVLTLEEYRLFQMVVRRGAEVHKAASKSGKRAPRP
MKIRLWFDRGALCLTSKRDRANRGYTVDHTFYMSKVKFCLLAPGRAAGRG
IGQGSRRFGENHDSKRDAWAWTWGGGDLGDYYTTANSDLRDGDDQRSVVS
VGEPSKMPGEESHHGGGLERAGEEGLAGVAKCSRDSVSSNESSAMSFRDE
ADRGAGGGDCVAFEVMSNASSELLAPPSSGKGFAMPRRVLSIHVLGRSTP
LQLWFPDEAEATIWQGMLTKLAWKEQGYL
back to top