prot_H-elongata_contig70920.14749.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig70920.14749.1
Unique Name	prot_H-elongata_contig70920.14749.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	120

Homology

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BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: D7G8V9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V9_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 3.440e-52
Identity = 86/114 (75.44%), Postives = 97/114 (85.09%), Query Frame = 0

Query:    4 VCSASAFVPTGPFVGSRMASVAQQPSNSALSMAAQDMVGSSAPLGFFDPMGFSKGSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 117
            + SASAFVP+  FVGS ++SV +  S++A+SMAA DMVG+SAPLGFFDPMGFSKG  ERLN YRE+ELKHGRTAML VVGFLTQE WHPLYNG LSSNP KAI EVPPEGL Q+
Sbjct:   11 LASASAFVPSASFVGSPVSSVTRPASSTAVSMAASDMVGASAPLGFFDPMGFSKGPAERLNAYREAELKHGRTAMLAVVGFLTQENWHPLYNGGLSSNPVKAITEVPPEGLFQI 124

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BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S0XDX8_9STRA (Hypothetical protein n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDX8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.060e-28
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 0

Query:   39 DMVGSSAPLGFFDPMGFSKG-SEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 117
            ++VG+SAPLGFFDP GFSKG S+E L +YRESELKHGR AML V+G+LTQE +HP Y G+LS NP  A  EVPP G +Q+
Sbjct:   37 ELVGASAPLGFFDPFGFSKGVSDETLFKYRESELKHGRVAMLAVLGWLTQERFHPFYEGKLSGNPLVAFGEVPPLGFVQI 116

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BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: I2CPJ1_NANGC (Protein fucoxanthin chlorophyll a c protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ1_NANGC)

HSP 1 Score: 108 bits (271), Expect = 2.620e-27
Identity = 58/118 (49.15%), Postives = 75/118 (63.56%), Query Frame = 0

Query:    1 ANNVCSASAFVPTGPFVGSRMASVAQQPSNSALSMAAQDMVGSSAPLGFFDPMGFS-KGSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 117
            A  + S SAFVP  P             +   ++M    M+GSSAP   FDP+GF+ K  ++ LN+YRESELKHGR AML V+G++ QE WHPLY+G+LSSNP KA+ EVP  G  Q+
Sbjct:   12 AVTMASVSAFVPPAPSAPR---------TRGVVNMGLDGMIGSSAPFKNFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWVVQEVWHPLYDGKLSSNPLKALTEVPLIGWAQI 120

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BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S0E1K9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E1K9_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 2.790e-26
Identity = 56/116 (48.28%), Postives = 76/116 (65.52%), Query Frame = 0

Query:    4 VCSA-SAFVPTGPFVGSRMASVAQQPSNSALSMAAQDMVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 117
            +CSA +AF PT   V    +SVA Q       M    ++G  APL +FDP+GFSK  S E + +YRE+ELKHGR AML   G +TQ+AWHPL++G+LS+NP  AI + P  G++Q+
Sbjct:    4 LCSAVTAFAPTPVLVRPASSSVAVQ-------MKVGGLIGDCAPLAYFDPLGFSKDASPETMKKYREAELKHGRVAMLAAWGMITQDAWHPLFDGKLSANPLLAIIQTPKLGVIQI 112

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BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S3AG67_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG67_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 2.330e-25
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 0

Query:   39 DMVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 117
            DMVGSSAPLGFFDP+GFSK  S E + ++RE+ELKHGR AML V G +T + +HPL+ GQ SSNP  A+ +VP  G LQ+
Sbjct:   47 DMVGSSAPLGFFDPLGFSKDASPETMKKFREAELKHGRVAMLAVFGMITADKFHPLFGGQCSSNPLLALTQVPKLGWLQI 126

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BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: Q2IA68_ISOGA (Chloroplast light harvesting protein isoform 11 n=1 Tax=Isochrysis galbana TaxID=37099 RepID=Q2IA68_ISOGA)

HSP 1 Score: 102 bits (254), Expect = 6.940e-25
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = 0

Query:   26 QQPSNSALSMAAQDMVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 117
            QQP+   +    + MVG SAPLGFFDP GFSK  S   + ++RE+ELKHGR AML   G +T + +HPLY+G+LSSNP  AI +VP  GLLQ+
Sbjct:   24 QQPACQGIQAKIKGMVGDSAPLGFFDPFGFSKEASPASMAKFREAELKHGRVAMLASAGMITADKFHPLYDGKLSSNPLLAISQVPKLGLLQI 116

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BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S3IA89_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3IA89_9SPIT)

HSP 1 Score: 99.8 bits (247), Expect = 5.120e-24
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0

Query:   39 DMVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 117
            DMVG+  PLGFFDP+GFSK  S   + ++RE+ELKHGR AML   G +T + +HPLY+G+LSSNP  AI +VP  GLLQ+
Sbjct:   19 DMVGACKPLGFFDPLGFSKDASPASMAKFREAELKHGRVAMLACAGMITADKFHPLYDGKLSSNPLLAIAQVPKLGLLQI 98

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BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A0G4GBS7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GBS7_VITBC)

HSP 1 Score: 99.8 bits (247), Expect = 5.610e-23
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 0

Query:   40 MVGSSAPLGFFDPMGFSKG-SEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 117
            ++GSSAPLGFFDP+GF+K  S + +   RE ELKHGR AM  V+G++TQ  +HPLY G+LS++P KAI EVP  G++Q+
Sbjct:   99 LIGSSAPLGFFDPLGFTKNKSTQEIARLRECELKHGRLAMFAVLGWMTQTVFHPLYGGKLSADPLKAITEVPAPGIIQL 177

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BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S3TFW5_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TFW5_EMIHU)

HSP 1 Score: 96.3 bits (238), Expect = 2.340e-22
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 0

Query:   40 MVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 117
            MVG   PLG+FDP+GFSK  S E + ++RE+ELKHGR AML   G +T + +HPL+ G+LSSNP  AI +VP  GLLQ+
Sbjct:   49 MVGDCKPLGYFDPLGFSKDASPETMAKFREAELKHGRVAMLACAGMITADKFHPLFGGKLSSNPLLAITQVPKLGLLQI 127

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BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Match: A0A7S4B2U4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2U4_CHRCT)

HSP 1 Score: 95.9 bits (237), Expect = 3.160e-22
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 0

Query:   40 MVGSSAPLGFFDPMGFSK-GSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSSNPCKAIFEVPPEGLLQV 117
            +VG SAPLGFFDP+G++K  S   L +YRE ELKHGR AML  +G +  + WHPLY G  S+NP  AI +VP  GLLQ+
Sbjct:   55 LVGDSAPLGFFDPLGYTKKASPADLKKYRECELKHGRVAMLASMGMVVADFWHPLYGGGNSANPLVAITQVPKAGLLQI 133

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot

BLAST of mRNA_H-elongata_contig70920.14749.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G8V9_ECTSI	3.440e-52	75.44	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A7S0XDX8_9STRA	1.060e-28	66.25	Hypothetical protein n=2 Tax=Chromulina nebulosa T...	[more]
I2CPJ1_NANGC	2.620e-27	49.15	Protein fucoxanthin chlorophyll a c protein n=1 Ta...	[more]
A0A7S0E1K9_9EUKA	2.790e-26	48.28	Hypothetical protein n=1 Tax=Phaeocystis antarctic...	[more]
A0A7S3AG67_9EUKA	2.330e-25	61.25	Hypothetical protein n=1 Tax=Haptolina ericina Tax...	[more]
Q2IA68_ISOGA	6.940e-25	54.84	Chloroplast light harvesting protein isoform 11 n=...	[more]
A0A7S3IA89_9SPIT	5.120e-24	58.75	Hypothetical protein (Fragment) n=1 Tax=Favella eh...	[more]
A0A0G4GBS7_VITBC	5.610e-23	56.96	Uncharacterized protein n=1 Tax=Vitrella brassicaf...	[more]
A0A7S3TFW5_EMIHU	2.340e-22	56.96	Hypothetical protein n=1 Tax=Emiliania huxleyi Tax...	[more]
A0A7S4B2U4_CHRCT	3.160e-22	56.96	Hypothetical protein n=1 Tax=Chrysotila carterae T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 118..119
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 25..116
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 31..116
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 10..111 e-value: 1.2E-15 score: 59.8
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 42..92 e-value: 6.6E-16 score: 59.2
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 25..116

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig70920	contig	H-elongata_contig70920:1734..2959 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig70920.14749.1	mRNA_H-elongata_contig70920.14749.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig70920 1734..2959 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig70920.14749.1 ID=prot_H-elongata_contig70920.14749.1|Name=mRNA_H-elongata_contig70920.14749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
ANNVCSASAFVPTGPFVGSRMASVAQQPSNSALSMAAQDMVGSSAPLGFF
DPMGFSKGSEERLNEYRESELKHGRTAMLGVVGFLTQEAWHPLYNGQLSS
NPCKAIFEVPPEGLLQVKD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln