prot_H-elongata_contig70615.14721.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig70615.14721.1
Unique Nameprot_H-elongata_contig70615.14721.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length302
Homology
BLAST of mRNA_H-elongata_contig70615.14721.1 vs. uniprot
Match: D8LJ46_ECTSI (Similar to deoxynucleotidyltransferase, terminal, interacting protein 2, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ46_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 1.230e-42
Identity = 87/130 (66.92%), Postives = 101/130 (77.69%), Query Frame = 0
Query:  178 AIRALDSGLSRPKDLFDVKSTRGESLATSVDR------KAAKLYAGSALYSGRDRAMLLEKTKAPKDETAGKGWFNMEQAEMTPELKRDLEVIRMRNYMDPKRFYKSSDKVSKFMQASVRRLQAGYYFTA 301
            A R LDSGL+ PK L    + +G+SL  SV        KAAKL AGS+LYSGRDRAMLLE++KAPKD+TAGKGWFNMEQAEMTPELKRDL+VIRMRNY+DPKRFYK+SDKVSKFMQ    +     YF++
Sbjct:  350 APRTLDSGLASPKYLQYSGTAKGKSLTASVSSGVVDGGKAAKLMAGSSLYSGRDRAMLLERSKAPKDDTAGKGWFNMEQAEMTPELKRDLQVIRMRNYVDPKRFYKASDKVSKFMQIGTVKEGPSEYFSS 479          
BLAST of mRNA_H-elongata_contig70615.14721.1 vs. uniprot
Match: A0A3R7HHL4_9STRA (Fcf2 domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HHL4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.220e-11
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 0
Query:  182 LDSGLSRPKDLFDVKSTRGESLAT-SVDRKAAK----LYAGSALYSGRDRAMLLEKTKAPKDETAGKGWFNMEQAEMTPELKRDLEVIRMRNYMDPKRFYKSSD 280
            LDSG S+ K+ FD K  +  ++AT   D +AA+    +  G  + +  +R    ++ ++ + ++AG+ WFN E  EMT + +RD  +++MRNY+DPK+FYKSSD
Sbjct:  194 LDSGASQYKNFFDFKKGKNSNVATLRADARAAEEASVVARGQKVMAHSER----QRAESQRKKSAGRRWFNFESEEMTADARRDFALLKMRNYLDPKKFYKSSD 293          
BLAST of mRNA_H-elongata_contig70615.14721.1 vs. uniprot
Match: A0A2P4XL72_9STRA (Nucleolus protein required for cell viability n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XL72_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.570e-11
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 0
Query:  182 LDSGLSRPKDLFDVKSTRGESLAT-----SVDRKAAKLYAGSALYSGRDRAMLLEKTKAPKDETAGKGWFNMEQAEMTPELKRDLEVIRMRNYMDPKRFYKSSD 280
            LDSG S+ K+ F+   ++  + AT       D +A  L AG    +  +R    ++ ++   ++AG+ WFN E  EMT + +RD  ++RMRNY+DPK+FYKSSD
Sbjct:  170 LDSGASQYKEFFNFDGSKRSTAATLRADARADEEAKLLAAGHKAIAHSER----QRAESQHKKSAGRRWFNFESEEMTDDARRDFALLRMRNYLDPKKFYKSSD 269          
BLAST of mRNA_H-elongata_contig70615.14721.1 vs. uniprot
Match: A0A329SAL1_9STRA (Fcf2 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SAL1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.640e-11
Identity = 42/104 (40.38%), Postives = 64/104 (61.54%), Query Frame = 0
Query:  182 LDSGLSRPKDLFDVKSTRGESLAT-SVDRKAAK----LYAGSALYSGRDRAMLLEKTKAPKDETAGKGWFNMEQAEMTPELKRDLEVIRMRNYMDPKRFYKSSD 280
            LDSG S+ ++ F+ + +R    AT   D +AA+    L AG    +  DR    ++ ++   ++AG+ WFN E  EMT + +RD  ++RMRNY+DPK+FYKSSD
Sbjct:  174 LDSGASQYQEFFNFEGSRRSQAATLRADARAAEEAKVLAAGQKAVAHSDR----QRAESQYKKSAGRRWFNFESEEMTDDSRRDFALLRMRNYLDPKKFYKSSD 273          
BLAST of mRNA_H-elongata_contig70615.14721.1 vs. uniprot
Match: B5Y3V5_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3V5_PHATC)

HSP 1 Score: 67.8 bits (164), Expect = 1.390e-10
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:  241 AGKGWFNMEQAEMTPELKRDLEVIRMRNYMDPKRFYKSSDKVSKFMQASV 290
            AG  WFNM+ A MT +LK+D+ +IR RNY+DPKRFYKSSD   KF+Q   
Sbjct:    8 AGSNWFNMKPAAMTEDLKKDIALIRSRNYLDPKRFYKSSDPTGKFVQVGT 57          
BLAST of mRNA_H-elongata_contig70615.14721.1 vs. uniprot
Match: A0A8C5AVQ7_GADMO (Deoxynucleotidyltransferase, terminal, interacting protein 2 n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5AVQ7_GADMO)

HSP 1 Score: 72.4 bits (176), Expect = 1.900e-10
Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 0
Query:  182 LDSGLSRP-----KDLFDVKSTRGESLATSVDRKAAKLYAGSALYSGRDRAMLLEKTKAPKDETAGKGWFNMEQAEMTPELKRDLEVIRMRNYMDPKRFYKSSDK--VSKFMQASV 290
             D   S+P     ++L D K  + E++  SV     +  + +  Y+   R++ L K K  +D++ G GWFNM+  E+TPELK DL+VI+MR  +DPKRFYK SD+  + KF Q + 
Sbjct:  739 FDGSKSKPVSNSLRNLKDPK-IQDEAMKNSVLGPEFEKQSAAPAYNEAKRSLKL-KRKEERDKSTGDGWFNMKAPELTPELKADLKVIKMRGALDPKRFYKKSDRDGLPKFFQVAT 852          
BLAST of mRNA_H-elongata_contig70615.14721.1 vs. uniprot
Match: A0A448YXG6_9STRA (Fcf2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXG6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.950e-10
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 0
Query:  196 KSTRGESLATSVDRKAAKLYAGSALYSGRDRAM----------LLEKTKAPKDETAGKGWFNMEQAEMTPELKRDLEVIRMRNYMDPKRFYKSSDKVSKFMQASV 290
            ++ +G++      R+A    AGSA+ S R   +            + T+A  D +AG+GWF M+ A MT EL+ DL +IR R Y+DPKRFYKSSDK    +Q   
Sbjct:  155 RAEKGDASTRGFVREATASKAGSAMSSRRGGFLPSSYEASYSHFKKGTRAAPDTSAGRGWFGMKPAAMTEELRTDLAIIRNRTYLDPKRFYKSSDKHHSVVQVGT 259          
BLAST of mRNA_H-elongata_contig70615.14721.1 vs. uniprot
Match: A0A6A3S636_9STRA (Fcf2 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3S636_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.190e-10
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 0
Query:  182 LDSGLSRPKDLFDVKSTRGESLATSVDRKAAKLYAGSALYSGRDRAMLLEKTKAPKD--ETAGKGWFNMEQAEMTPELKRDLEVIRMRNYMDPKRFYKSSD 280
            LDSG S  ++ F+   +R  S A ++   A        L +G+      E+ +A     ++AG+ WFN E  EMT + +RD +++RMRNY+DPK+FYKSSD
Sbjct:  242 LDSGASHYQEFFNFDGSR-RSTAATLRADACAAEEAKVLAAGQKEVAHSERQRAESQHKKSAGRRWFNFESDEMTDDARRDFQLLRMRNYLDPKKFYKSSD 341          
BLAST of mRNA_H-elongata_contig70615.14721.1 vs. uniprot
Match: V9FE16_PHYPR (Fcf2 domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9FE16_PHYPR)

HSP 1 Score: 71.2 bits (173), Expect = 2.320e-10
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 0
Query:  182 LDSGLSRPKDLFDVKSTRGESLAT-SVDRKAAK----LYAGSALYSGRDRAMLLEKTKAPKDETAGKGWFNMEQAEMTPELKRDLEVIRMRNYMDPKRFYKSSD 280
            LDSG S+ ++ F+   ++    AT   D +AA+    L AG    +  DR    ++ ++   ++AG+ WFN E  EMT + +RD  ++RMRNY+DPK+FYK+SD
Sbjct:  183 LDSGASQYQEFFNFAGSKRSQAATLRADARAAEEAKVLAAGQKAVAHSDR----QRAESQYKKSAGRRWFNFESEEMTDDARRDFALLRMRNYLDPKKFYKTSD 282          
BLAST of mRNA_H-elongata_contig70615.14721.1 vs. uniprot
Match: A0A0K0FZZ5_STRVS (Fcf2 domain-containing protein n=2 Tax=Strongyloides TaxID=6247 RepID=A0A0K0FZZ5_STRVS)

HSP 1 Score: 67.8 bits (164), Expect = 2.780e-10
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 0
Query:  203 LATSVDRKAAKLYAGSALYSGRDRAMLLEKT-------KAPKDETAGKGWFNMEQAEMTPELKRDLEVIRMRNYMDPKRFYK--SSDKVSKFMQ-ASVRRLQAGYY 298
            ++  +D+  A    G A+     + M  +K        KA + ETAGKGWF+M+  EMT E+KRDLEVI+MR  +DPK  YK  SS+++ K  Q  +V   +A +Y
Sbjct:   18 ISPDIDKIVANAVVGPAIEKNIGQCMRDKKAGEKKKERKAVRQETAGKGWFDMKSPEMTEEIKRDLEVIQMRGALDPKAHYKKNSSNELPKHFQIGTVIETKADFY 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70615.14721.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ46_ECTSI1.230e-4266.92Similar to deoxynucleotidyltransferase, terminal, ... [more]
A0A3R7HHL4_9STRA1.220e-1138.46Fcf2 domain-containing protein n=4 Tax=Phytophthor... [more]
A0A2P4XL72_9STRA2.570e-1138.46Nucleolus protein required for cell viability n=2 ... [more]
A0A329SAL1_9STRA2.640e-1140.38Fcf2 domain-containing protein n=2 Tax=Phytophthor... [more]
B5Y3V5_PHATC1.390e-1060.00Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A8C5AVQ7_GADMO1.900e-1038.79Deoxynucleotidyltransferase, terminal, interacting... [more]
A0A448YXG6_9STRA1.950e-1039.05Fcf2 domain-containing protein n=1 Tax=Pseudo-nitz... [more]
A0A6A3S636_9STRA2.190e-1038.61Fcf2 domain-containing protein n=4 Tax=Phytophthor... [more]
V9FE16_PHYPR2.320e-1038.46Fcf2 domain-containing protein n=9 Tax=Phytophthor... [more]
A0A0K0FZZ5_STRVS2.780e-1039.62Fcf2 domain-containing protein n=2 Tax=Strongyloid... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014810Fcf2 pre-rRNA processing, C-terminalPFAMPF08698Fcf2coord: 238..287
e-value: 2.2E-18
score: 66.4
IPR039883Fcf2/DNTTIP2PANTHERPTHR21686UNCHARACTERIZEDcoord: 8..287

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70615contigH-elongata_contig70615:853..3108 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70615.14721.1mRNA_H-elongata_contig70615.14721.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig70615 853..3108 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig70615.14721.1 ID=prot_H-elongata_contig70615.14721.1|Name=mRNA_H-elongata_contig70615.14721.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=302bp
DELEKEVEKETEEDKMGKPENAQERNRTDEEEPQGSEGEEGNLTAEGKEE
DRTRGQGKQLRESVAGGENGDKGDAHDREAWKRRRVKGSAEKNGELEGKE
DEPEKEKGDEDDDDMKGEEEVEDDEEVDIDAMIKLASSAAKGCTLVLGSA
SDQGAAGGRKRPASDDGPTGSRKRQRGAIRALDSGLSRPKDLFDVKSTRG
ESLATSVDRKAAKLYAGSALYSGRDRAMLLEKTKAPKDETAGKGWFNMEQ
AEMTPELKRDLEVIRMRNYMDPKRFYKSSDKVSKFMQASVRRLQAGYYFT
A*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014810Fcf2_C
IPR039883Fcf2/DNTTIP2