prot_H-elongata_contig70603.14719.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig70603.14719.1
Unique Nameprot_H-elongata_contig70603.14719.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length244
Homology
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BLAST of mRNA_H-elongata_contig70603.14719.1 vs. uniprot
Match: A0A6H5JPX1_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX1_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.470e-12
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 0 
Query:  175 ASATDKCSFFAKLRALEGGKGTIGTVHATSGVQGPRPEP-----IKSNDWDCLKCGTSNYKNASSCHRYAGLSKL 244
            A A  K SFFA+L+A E  KGT+GT+HAT    G          I+S+DW+CLKCG SNYKNAS+C R   L ++
Sbjct:  238 APAAGKNSFFAQLQASERKKGTVGTIHATGNHGGXXXXXXXXAGIQSSDWECLKCGKSNYKNASACDRCHALKRM 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70603.14719.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPX1_9PHAE2.470e-1250.67RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70603contigH-elongata_contig70603:73..804 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70603.14719.1mRNA_H-elongata_contig70603.14719.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig70603 73..804 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig70603.14719.1 ID=prot_H-elongata_contig70603.14719.1|Name=mRNA_H-elongata_contig70603.14719.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp
RKKGDREKARKAKKARSGGSKEHRDDGPGERKRNKNHASKQNKTKKQRRR
GEEKRTKSSKNDKQVLEESSGRRRKISSSSSSSSSEGEDGVETPMRGREE
RKSGKQGAKGSAGGECESSTVLREDAPTPPADNAAGMSHDTDSFRKYEAV
GLDEDAPTPPASPGVRTQEVDISGASATDKCSFFAKLRALEGGKGTIGTV
HATSGVQGPRPEPIKSNDWDCLKCGTSNYKNASSCHRYAGLSKL
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