mRNA_H-elongata_contig70603.14719.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig70603.14719.1
Unique NamemRNA_H-elongata_contig70603.14719.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig70603.14719.1 vs. uniprot
Match: A0A6H5JPX1_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX1_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.470e-12
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:  523 ASATDKCSFFAKLRALEGGKGTIGTVHATSGVQGPRPEP-----IKSNDWDCLKCGTSNYKNASSCHRYAGLSKL 732
            A A  K SFFA+L+A E  KGT+GT+HAT    G          I+S+DW+CLKCG SNYKNAS+C R   L ++
Sbjct:  238 APAAGKNSFFAQLQASERKKGTVGTIHATGNHGGXXXXXXXXAGIQSSDWECLKCGKSNYKNASACDRCHALKRM 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70603.14719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPX1_9PHAE2.470e-1250.67RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70603contigH-elongata_contig70603:73..804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue9.9e-07
Seed eggNOG ortholog65071.PYU1_T014749
EggNOG free text desc.Zinc finger domain
EggNOG OGs1MIB9@121069,2EQC1@1,2STD6@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_001430.1
Exons1
Model size732
Cds size732
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931104.6873956-CDS-H-elongata_contig70603:72..8041622931104.6873956-CDS-H-elongata_contig70603:72..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70603 73..804 -
1691679699.813655-CDS-H-elongata_contig70603:72..8041691679699.813655-CDS-H-elongata_contig70603:72..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig70603 73..804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70603.14719.1prot_H-elongata_contig70603.14719.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig70603 73..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig70603.14719.1

>prot_H-elongata_contig70603.14719.1 ID=prot_H-elongata_contig70603.14719.1|Name=mRNA_H-elongata_contig70603.14719.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp
RKKGDREKARKAKKARSGGSKEHRDDGPGERKRNKNHASKQNKTKKQRRR
GEEKRTKSSKNDKQVLEESSGRRRKISSSSSSSSSEGEDGVETPMRGREE
RKSGKQGAKGSAGGECESSTVLREDAPTPPADNAAGMSHDTDSFRKYEAV
GLDEDAPTPPASPGVRTQEVDISGASATDKCSFFAKLRALEGGKGTIGTV
HATSGVQGPRPEPIKSNDWDCLKCGTSNYKNASSCHRYAGLSKL
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mRNA from alignment at H-elongata_contig70603:73..804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig70603.14719.1 ID=mRNA_H-elongata_contig70603.14719.1|Name=mRNA_H-elongata_contig70603.14719.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=732bp|location=Sequence derived from alignment at H-elongata_contig70603:73..804- (Himanthalia elongata Himel1 dioecious)
AGAAAAAAAGGCGACAGAGAGAAGGCAAGAAAAGCGAAGAAAGCAAGGTC
GGGGGGTAGCAAGGAGCACAGGGACGACGGCCCCGGGGAGAGAAAGAGGA
ATAAGAATCACGCGAGTAAGCAAAATAAAACGAAGAAGCAACGTCGCCGG
GGGGAGGAAAAGCGGACCAAGTCGTCAAAGAATGATAAGCAGGTCTTGGA
GGAATCAAGCGGGCGGAGAAGAAAAATAAGTAGCAGCAGCAGCAGCTCGA
GCAGTGAAGGCGAGGATGGCGTCGAAACTCCCATGAGGGGGAGAGAAGAA
CGAAAGAGCGGGAAGCAGGGGGCGAAAGGGAGCGCGGGGGGCGAATGCGA
ATCGTCAACAGTGCTCAGGGAGGACGCACCGACTCCGCCTGCCGACAACG
CAGCCGGGATGTCTCACGACACCGATTCCTTCCGAAAGTACGAGGCGGTC
GGCTTGGACGAGGATGCACCAACTCCGCCAGCCAGTCCGGGAGTTCGAAC
GCAAGAAGTAGATATATCGGGGGCTTCTGCGACTGACAAGTGCTCGTTCT
TCGCCAAGCTTCGCGCCTTGGAGGGGGGAAAGGGAACGATCGGGACAGTT
CATGCTACCTCTGGAGTTCAGGGCCCGCGACCAGAGCCGATAAAGTCCAA
CGACTGGGATTGCCTCAAGTGTGGAACGAGCAACTACAAAAACGCCTCTT
CATGTCACAGGTACGCCGGGTTGTCGAAGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig70603:73..804-

>mRNA_H-elongata_contig70603.14719.1 ID=mRNA_H-elongata_contig70603.14719.1|Name=mRNA_H-elongata_contig70603.14719.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at H-elongata_contig70603:73..804- (Himanthalia elongata Himel1 dioecious)
AGAAAAAAAGGCGACAGAGAGAAGGCAAGAAAAGCGAAGAAAGCAAGGTC
GGGGGGTAGCAAGGAGCACAGGGACGACGGCCCCGGGGAGAGAAAGAGGA
ATAAGAATCACGCGAGTAAGCAAAATAAAACGAAGAAGCAACGTCGCCGG
GGGGAGGAAAAGCGGACCAAGTCGTCAAAGAATGATAAGCAGGTCTTGGA
GGAATCAAGCGGGCGGAGAAGAAAAATAAGTAGCAGCAGCAGCAGCTCGA
GCAGTGAAGGCGAGGATGGCGTCGAAACTCCCATGAGGGGGAGAGAAGAA
CGAAAGAGCGGGAAGCAGGGGGCGAAAGGGAGCGCGGGGGGCGAATGCGA
ATCGTCAACAGTGCTCAGGGAGGACGCACCGACTCCGCCTGCCGACAACG
CAGCCGGGATGTCTCACGACACCGATTCCTTCCGAAAGTACGAGGCGGTC
GGCTTGGACGAGGATGCACCAACTCCGCCAGCCAGTCCGGGAGTTCGAAC
GCAAGAAGTAGATATATCGGGGGCTTCTGCGACTGACAAGTGCTCGTTCT
TCGCCAAGCTTCGCGCCTTGGAGGGGGGAAAGGGAACGATCGGGACAGTT
CATGCTACCTCTGGAGTTCAGGGCCCGCGACCAGAGCCGATAAAGTCCAA
CGACTGGGATTGCCTCAAGTGTGGAACGAGCAACTACAAAAACGCCTCTT
CATGTCACAGGTACGCCGGGTTGTCGAAGTTGAGAAAAAAAGGCGACAGA
GAGAAGGCAAGAAAAGCGAAGAAAGCAAGGTCGGGGGGTAGCAAGGAGCA
CAGGGACGACGGCCCCGGGGAGAGAAAGAGGAATAAGAATCACGCGAGTA
AGCAAAATAAAACGAAGAAGCAACGTCGCCGGGGGGAGGAAAAGCGGACC
AAGTCGTCAAAGAATGATAAGCAGGTCTTGGAGGAATCAAGCGGGCGGAG
AAGAAAAATAAGTAGCAGCAGCAGCAGCTCGAGCAGTGAAGGCGAGGATG
GCGTCGAAACTCCCATGAGGGGGAGAGAAGAACGAAAGAGCGGGAAGCAG
GGGGCGAAAGGGAGCGCGGGGGGCGAATGCGAATCGTCAACAGTGCTCAG
GGAGGACGCACCGACTCCGCCTGCCGACAACGCAGCCGGGATGTCTCACG
ACACCGATTCCTTCCGAAAGTACGAGGCGGTCGGCTTGGACGAGGATGCA
CCAACTCCGCCAGCCAGTCCGGGAGTTCGAACGCAAGAAGTAGATATATC
GGGGGCTTCTGCGACTGACAAGTGCTCGTTCTTCGCCAAGCTTCGCGCCT
TGGAGGGGGGAAAGGGAACGATCGGGACAGTTCATGCTACCTCTGGAGTT
CAGGGCCCGCGACCAGAGCCGATAAAGTCCAACGACTGGGATTGCCTCAA
GTGTGGAACGAGCAACTACAAAAACGCCTCTTCATGTCACAGGTACGCCG
GGTTGTCGAAGTTG
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