prot_H-elongata_contig70398.14696.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig70398.14696.1
Unique Nameprot_H-elongata_contig70398.14696.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length151
Homology
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BLAST of mRNA_H-elongata_contig70398.14696.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 9.810e-13
Identity = 46/126 (36.51%), Postives = 62/126 (49.21%), Query Frame = 0 
Query:   29 VVRNTSQAEALAEALLCEGAGRFVAEWHGIVNLSRPLYVSNGTTLNVTGFPTGAGEEPDATAAV---IGDGTFRLIEAH---RGSVIFLSDLIFSGGNGALSIVDGSYAEVIGCAFISNNASSSNG 148
            VV  T +A  L+EALLC GAG F  EW G V L RP+++SNG+ + VTG   G        A V   + DG+   ++A    RG   + +   + GG   +   D        C+FI NNA  S G
Sbjct:   32 VVSTTEEASELSEALLCSGAGEFEVEWQGEVLLERPIFISNGSYVKVTGASAGEAVIDGGDAVVLFNVNDGSTLELDALSLVRGVATYTATYSYGGGGAVILRSDDCILTASSCSFIGNNAIDSGG 157
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BLAST of mRNA_H-elongata_contig70398.14696.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.220e-5
Identity = 40/124 (32.26%), Postives = 60/124 (48.39%), Query Frame = 0 
Query:   20 CNTSSSVYFVVRNTSQAEALAEALLCEGAGRFVAEWHGIVNLSRPLYVSNGTTLNVTGFPTGAGEEPDATAAVIGDGTFRLIEAHRGSVIFLSDLIFSGGNGALSIVDGSYAEVIGCAFISNNA 143
            C    S  ++V NT+ A  LA A+ C G G F  EW G V + + L++S GTT+N+TG  T A     + A   G+G  R+      S + L  +  S G+G   +V G+    +G    S  +
Sbjct:  112 CAPDLSREWLVENTADAIELANAINCTG-GTFDVEWRGSVLVPQTLWISQGTTVNITGVATTA-----SPAVADGNGESRIFGVINSS-LNLHGMTLSNGHG---VVGGAIFSALGTVTFSGGS 225
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BLAST of mRNA_H-elongata_contig70398.14696.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.240e-5
Identity = 40/124 (32.26%), Postives = 62/124 (50.00%), Query Frame = 0 
Query:   20 CNTSSSVYFVVRNTSQAEALAEALLCEGAGRFVAEWHGIVNLSRPLYVSNGTTLNVTGFPTGAGEEPDATAAVIGDGTFRLIEAHRGSVIFLSDLIFSGGNGALSIVDGSYAEVIGCAFISNNA 143
            C+   S  ++V +T+ A  LA A+ C G G F  EW G V + + L+VS GTT+N+TG  T A     + A   G+G  R+      S + L  +  S G+G   +V G+    +G    S ++
Sbjct:  218 CSPDLSREWLVEDTADAIELANAINCTG-GTFDVEWRGSVIVPQTLWVSQGTTVNITGVDTTA-----SPAVADGNGESRIFGVINSS-LNLHGMTLSNGHG---VVGGAIFSALGTVTFSGSS 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70398.14696.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE9.810e-1336.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP6_9PHAE1.220e-532.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV90_ECTSI1.240e-532.26Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..150
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.922

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70398contigH-elongata_contig70398:2096..2548 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70398.14696.1mRNA_H-elongata_contig70398.14696.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig70398 2050..2625 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig70398.14696.1 ID=prot_H-elongata_contig70398.14696.1|Name=mRNA_H-elongata_contig70398.14696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
MLLLLLLLFCCGVIVAASQCNTSSSVYFVVRNTSQAEALAEALLCEGAGR
FVAEWHGIVNLSRPLYVSNGTTLNVTGFPTGAGEEPDATAAVIGDGTFRL
IEAHRGSVIFLSDLIFSGGNGALSIVDGSYAEVIGCAFISNNASSSNGGR
*
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