prot_H-elongata_contig70381.14694.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig70381.14694.1
Unique Nameprot_H-elongata_contig70381.14694.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length97
Homology
[Close]
BLAST of mRNA_H-elongata_contig70381.14694.1 vs. uniprot
Match: A0A388KR43_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KR43_CHABU)

HSP 1 Score: 60.8 bits (146), Expect = 1.100e-8
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 0 
Query:    6 CGAHSIDLLTKDICGMPWAKATVAAVKECIKFIKHHQKTLALYKTKSAGRGLLLPNDIRFGTAFIMCERFKA----------VSKTLYVVL 86
            C AH   LL +DI  + W K TV      +KFI++H  T +L  +      LL P ++RFG+ ++M ERF+           V + LYV+L
Sbjct:  915 CAAHCCSLLLRDISKLDWIKGTVNRSHTIVKFIRNHHCTHSLMMSLDDSLSLLRPTEVRFGSVYMMMERFEGWWPELKKVVEVMEPLYVLL 1005
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70381.14694.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A388KR43_CHABU1.100e-835.16Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 5..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70381contigH-elongata_contig70381:2712..3002 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70381.14694.1mRNA_H-elongata_contig70381.14694.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig70381 2712..3002 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig70381.14694.1 ID=prot_H-elongata_contig70381.14694.1|Name=mRNA_H-elongata_contig70381.14694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MTGFLCGAHSIDLLTKDICGMPWAKATVAAVKECIKFIKHHQKTLALYKT
KSAGRGLLLPNDIRFGTAFIMCERFKAVSKTLYVVLFGEWVTVDSW*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf