prot_H-elongata_contig70179.14678.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig70179.14678.1
Unique Nameprot_H-elongata_contig70179.14678.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length92
Homology
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.630e-34
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 0
Query:    1 VRCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVGLFSPGRLL 92
            VRCR+TG+ LVEGWA+ASLRPSVLSAAVL +EDL+PG++V+GEV AV+ FGLLVKLG+GV  LVP+ HL D T+KNPK RFKVG    GR+L
Sbjct:  588 VRCRVTGSSLVEGWAAASLRPSVLSAAVLRYEDLQPGSLVEGEVAAVEAFGLLVKLGEGVRALVPRNHLGDVTIKNPKARFKVGARVKGRVL 679          
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.240e-33
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 0
Query:    1 VRCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVGLFSPGRLL 92
            VRCR+TG+ LVEGWA+ASLRPSVLSAAVL ++DL+PG++V+GEV AV+ FGLLVKLG+GV  LVPK HL D  VKNPK RFKVG    GR+L
Sbjct:  536 VRCRVTGSSLVEGWAAASLRPSVLSAAVLRYQDLKPGSLVEGEVAAVEAFGLLVKLGEGVRALVPKNHLGDVGVKNPKARFKVGARVKGRVL 627          
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: UPI001E1D8281 (protein RRP5 homolog isoform X1 n=2 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1D8281)

HSP 1 Score: 79.7 bits (195), Expect = 2.140e-15
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 0
Query:    2 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 84
            +CRI     ++  A  SLR SV+ A  +S+ D++PGA+V G VLA+K +G+LVK+G  +  LVP +HLAD  +KNP+ ++++G
Sbjct:  415 KCRIIDYSPMDELALLSLRTSVIEAQYISYHDIKPGAVVKGTVLAIKPYGMLVKVGGQIRGLVPPMHLADIPMKNPEKKYRIG 497          
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A452RUC4_URSAM (Programmed cell death 11 n=1 Tax=Ursus americanus TaxID=9643 RepID=A0A452RUC4_URSAM)

HSP 1 Score: 79.3 bits (194), Expect = 2.920e-15
Identity = 34/83 (40.96%), Postives = 59/83 (71.08%), Query Frame = 0
Query:    2 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 84
            +CR+     ++  A  SLR S++ A  L + D++PGA+V+G VL VK++G+LVK+G+ +  L+P +HLAD  +KNP+ ++++G
Sbjct:  419 KCRVIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIG 501          
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A452VGI4_URSMA (Programmed cell death 11 n=1 Tax=Ursus maritimus TaxID=29073 RepID=A0A452VGI4_URSMA)

HSP 1 Score: 79.3 bits (194), Expect = 2.920e-15
Identity = 34/83 (40.96%), Postives = 59/83 (71.08%), Query Frame = 0
Query:    2 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 84
            +CR+     ++  A  SLR S++ A  L + D++PGA+V+G VL VK++G+LVK+G+ +  L+P +HLAD  +KNP+ ++++G
Sbjct:  418 KCRVIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIG 500          
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A452VGN1_URSMA (Programmed cell death 11 n=1 Tax=Ursus maritimus TaxID=29073 RepID=A0A452VGN1_URSMA)

HSP 1 Score: 79.3 bits (194), Expect = 2.920e-15
Identity = 34/83 (40.96%), Postives = 59/83 (71.08%), Query Frame = 0
Query:    2 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 84
            +CR+     ++  A  SLR S++ A  L + D++PGA+V+G VL VK++G+LVK+G+ +  L+P +HLAD  +KNP+ ++++G
Sbjct:  416 KCRVIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIG 498          
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A452VGH6_URSMA (Programmed cell death 11 n=2 Tax=Ursus maritimus TaxID=29073 RepID=A0A452VGH6_URSMA)

HSP 1 Score: 79.3 bits (194), Expect = 2.920e-15
Identity = 34/83 (40.96%), Postives = 59/83 (71.08%), Query Frame = 0
Query:    2 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 84
            +CR+     ++  A  SLR S++ A  L + D++PGA+V+G VL VK++G+LVK+G+ +  L+P +HLAD  +KNP+ ++++G
Sbjct:  418 KCRVIDYSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPMHLADILMKNPEKKYRIG 500          
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: A0A8I6AFK2_RAT (Programmed cell death 11 n=1 Tax=Rattus norvegicus TaxID=10116 RepID=A0A8I6AFK2_RAT)

HSP 1 Score: 77.8 bits (190), Expect = 1.010e-14
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0
Query:    2 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 84
            RCRI     ++  A  SLR S+++A  L ++D++ G IV G+VLA+K FG+LVK+G+ +  LVP +HLAD  +KNP+ +F  G
Sbjct:  418 RCRIIDYSQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTG 500          
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: UPI000B4F903E (protein RRP5 homolog n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4F903E)

HSP 1 Score: 77.8 bits (190), Expect = 1.010e-14
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 0
Query:    2 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 84
            +CRI    L++  A  SLR SV++A  L + D+R G +V G VLA+K FG+LVK+G+ +  LV  +HLAD  +KNP+ ++ +G
Sbjct:  417 KCRIIDYSLMDELALLSLRKSVIAARFLRYHDIRTGTVVKGTVLAIKPFGILVKVGEQIKGLVSSLHLADVMMKNPEKKYHIG 499          
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Match: UPI0013F3083F (protein RRP5 homolog n=1 Tax=Rattus rattus TaxID=10117 RepID=UPI0013F3083F)

HSP 1 Score: 77.8 bits (190), Expect = 1.010e-14
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0
Query:    2 RCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTFGLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVG 84
            RCRI     ++  A  SLR S+++A  L ++D++ G IV G+VLA+K FG+LVK+G+ +  LVP +HLAD  +KNP+ +F  G
Sbjct:  418 RCRIIDYSQMDELALLSLRKSIIAAPFLRYQDIKTGTIVKGKVLALKPFGMLVKVGEQMRGLVPSMHLADIMMKNPEKKFNTG 500          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig70179.14678.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LPP1_9PHAE2.630e-3470.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRR9_ECTSI1.240e-3370.65rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si... [more]
UPI001E1D82812.140e-1544.58protein RRP5 homolog isoform X1 n=2 Tax=Echinops t... [more]
A0A452RUC4_URSAM2.920e-1540.96Programmed cell death 11 n=1 Tax=Ursus americanus ... [more]
A0A452VGI4_URSMA2.920e-1540.96Programmed cell death 11 n=1 Tax=Ursus maritimus T... [more]
A0A452VGN1_URSMA2.920e-1540.96Programmed cell death 11 n=1 Tax=Ursus maritimus T... [more]
A0A452VGH6_URSMA2.920e-1540.96Programmed cell death 11 n=2 Tax=Ursus maritimus T... [more]
A0A8I6AFK2_RAT1.010e-1445.78Programmed cell death 11 n=1 Tax=Rattus norvegicus... [more]
UPI000B4F903E1.010e-1444.58protein RRP5 homolog n=1 Tax=Meriones unguiculatus... [more]
UPI0013F3083F1.010e-1445.78protein RRP5 homolog n=1 Tax=Rattus rattus TaxID=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 17..86
e-value: 1.4E-10
score: 42.8
NoneNo IPR availablePANTHERPTHR23270PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5coord: 1..86
IPR003029S1 domainPFAMPF00575S1coord: 35..84
e-value: 1.5E-7
score: 31.7
IPR003029S1 domainPROSITEPS50126S1coord: 37..92
score: 13.812
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 18..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig70179contigH-elongata_contig70179:122..397 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig70179.14678.1mRNA_H-elongata_contig70179.14678.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig70179 122..397 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig70179.14678.1 ID=prot_H-elongata_contig70179.14678.1|Name=mRNA_H-elongata_contig70179.14678.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
VRCRITGAFLVEGWASASLRPSVLSAAVLSHEDLRPGAIVDGEVLAVKTF
GLLVKLGDGVSTLVPKIHLADATVKNPKIRFKVGLFSPGRLL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003029S1_domain
IPR012340NA-bd_OB-fold