prot_H-elongata_contig70160.14675.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig70160.14675.1
Unique Name	prot_H-elongata_contig70160.14675.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	117

Homology

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BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: D7FYI4_ECTSI (S5 DRBM domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FYI4_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 6.650e-56
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0

Query:   25 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 117
            DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKE+QIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV
Sbjct:   52 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 144

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BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A7S2BZ58_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZ58_9STRA)

HSP 1 Score: 159 bits (403), Expect = 3.420e-46
Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = 0

Query:   25 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 117
            DDDKEWVPITKLGRLVKE KIKSLE+I+LFSM IKE+QIVD FLG+KLKDEVM IMPVQK + AGQ TRFKAFVAVGD SGHVGLGVKCAKEV
Sbjct:   63 DDDKEWVPITKLGRLVKEQKIKSLEEIFLFSMPIKEYQIVDLFLGTKLKDEVMGIMPVQKQTTAGQRTRFKAFVAVGDFSGHVGLGVKCAKEV 155

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BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A835Z6C9_9STRA (40S ribosomal protein S2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C9_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.140e-45
Identity = 79/90 (87.78%), Postives = 83/90 (92.22%), Query Frame = 0

Query:   28 KEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 117
            KEWVP+TKLGRLVKE KIKSLE+IY FSM I+E QIVD FLG KLKDEVMKIMPVQKVSAAGQITRFKAFVAVGD +GHVGLGVKCAKEV
Sbjct:   31 KEWVPVTKLGRLVKEEKIKSLEEIYSFSMRIQECQIVDKFLGDKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDSNGHVGLGVKCAKEV 120

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BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: RS2_DROME (40S ribosomal protein S2 n=40 Tax=Bilateria TaxID=33213 RepID=RS2_DROME)

HSP 1 Score: 154 bits (388), Expect = 2.670e-44
Identity = 71/93 (76.34%), Postives = 85/93 (91.40%), Query Frame = 0

Query:   25 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 117
            +D KEWVP+TKLGRLV+E KIKSLE+IYL+S+ IKEF+I+DFFLGS LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GH+GLGVKC+KEV
Sbjct:   38 EDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 130

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BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A6S7JAX4_PARCT (40S ribosomal protein S2 n=4 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7JAX4_PARCT)

HSP 1 Score: 154 bits (390), Expect = 3.850e-44
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 0

Query:   26 DDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 117
            DDKEWVP+TKLGRLVKE KIKSLE IYLFS+ IKEF+I+DFFLG+ LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEV
Sbjct:   66 DDKEWVPVTKLGRLVKELKIKSLEQIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDHNGHVGLGVKCSKEV 157

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BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A7R9QY82_9ACAR (40S ribosomal protein S2 (Fragment) n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9QY82_9ACAR)

HSP 1 Score: 150 bits (380), Expect = 3.880e-44
Identity = 70/93 (75.27%), Postives = 84/93 (90.32%), Query Frame = 0

Query:   25 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 117
            D DKEW+P+TKLGRLVK+ KIKSLE+IY FS+ IKEF+I+DFF+G +LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEV
Sbjct:   45 DGDKEWIPVTKLGRLVKDGKIKSLEEIYRFSLPIKEFEIIDFFIGPQLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEV 137

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BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A2G9R921_LITCT (40S ribosomal protein S2 n=2 Tax=Tetrapoda TaxID=32523 RepID=A0A2G9R921_LITCT)

HSP 1 Score: 152 bits (383), Expect = 4.640e-44
Identity = 73/92 (79.35%), Postives = 84/92 (91.30%), Query Frame = 0

Query:   26 DDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 117
            DDKEWVP+TKLGRLVK+ KIKSLE+IYLFS+ IKE +I+DFFLGS LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEV
Sbjct:   42 DDKEWVPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGSTLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEV 133

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BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A5B8MSG7_9CHLO (Ribosomal protein S5 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MSG7_9CHLO)

HSP 1 Score: 153 bits (387), Expect = 4.800e-44
Identity = 73/93 (78.49%), Postives = 85/93 (91.40%), Query Frame = 0

Query:   25 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 117
            D++  WVP+TKLGRLV+  KIKSLE IYLFSM IKE+QI+D+FLGS+LKDEVMKIMPVQK ++AGQ TRFKAFVAVGDE+GH+GLGVKCAKEV
Sbjct:   44 DEEDRWVPVTKLGRLVQSGKIKSLEQIYLFSMPIKEYQIIDYFLGSQLKDEVMKIMPVQKQTSAGQRTRFKAFVAVGDENGHLGLGVKCAKEV 136

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BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A8C6JXS0_MELUD (Ribosomal protein S2 n=1 Tax=Melopsittacus undulatus TaxID=13146 RepID=A0A8C6JXS0_MELUD)

HSP 1 Score: 150 bits (379), Expect = 6.010e-44
Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 0

Query:   26 DDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 117
            +DKEW+P+TKLGRLVK+ KIKSLE+IYLFS+ IKE +I+DFFLGS LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEV
Sbjct:   63 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEV 154

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BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Match: A0A1L3GA47_9NEOP (Ribosomal protein S2 (Fragment) n=13 Tax=Hesperiidae TaxID=40093 RepID=A0A1L3GA47_9NEOP)

HSP 1 Score: 148 bits (374), Expect = 7.790e-44
Identity = 68/93 (73.12%), Postives = 83/93 (89.25%), Query Frame = 0

Query:   25 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEV 117
            +D KEWVP+TKLGRLV+E KI+ LE+IYLFS+ IKEF+I+DFFLG+ L DEV+KIMPVQK + AGQ TRFKAFVA+GD +GH+GLGVKC+KEV
Sbjct:   20 EDQKEWVPVTKLGRLVREGKIEKLENIYLFSLPIKEFEIIDFFLGASLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 112

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot

BLAST of mRNA_H-elongata_contig70160.14675.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FYI4_ECTSI	6.650e-56	98.92	S5 DRBM domain-containing protein n=3 Tax=Eukaryot...	[more]
A0A7S2BZ58_9STRA	3.420e-46	86.02	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A835Z6C9_9STRA	1.140e-45	87.78	40S ribosomal protein S2 n=1 Tax=Tribonema minus T...	[more]
RS2_DROME	2.670e-44	76.34	40S ribosomal protein S2 n=40 Tax=Bilateria TaxID=...	[more]
A0A6S7JAX4_PARCT	3.850e-44	80.43	40S ribosomal protein S2 n=4 Tax=Alcyonacea TaxID=...	[more]
A0A7R9QY82_9ACAR	3.880e-44	75.27	40S ribosomal protein S2 (Fragment) n=1 Tax=Oppiel...	[more]
A0A2G9R921_LITCT	4.640e-44	79.35	40S ribosomal protein S2 n=2 Tax=Tetrapoda TaxID=3...	[more]
A0A5B8MSG7_9CHLO	4.800e-44	78.49	Ribosomal protein S5 n=1 Tax=Chloropicon primus Ta...	[more]
A0A8C6JXS0_MELUD	6.010e-44	77.17	Ribosomal protein S2 n=1 Tax=Melopsittacus undulat...	[more]
A0A1L3GA47_9NEOP	7.790e-44	73.12	Ribosomal protein S2 (Fragment) n=13 Tax=Hesperiid...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.770		coord: 29..117 e-value: 4.9E-42 score: 144.4
None	No IPR available	PANTHER	PTHR13718:SF85		coord: 2..117
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 66..117
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 72..117 e-value: 4.2E-18 score: 65.1
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 72..117 score: 17.046
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 2..117

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig70160	contig	H-elongata_contig70160:1936..2876 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig70160.14675.1	mRNA_H-elongata_contig70160.14675.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig70160 1936..2876 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig70160.14675.1 ID=prot_H-elongata_contig70160.14675.1|Name=mRNA_H-elongata_contig70160.14675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
GRGGFGRGRGDRGRGRGRGRGRPRDDDKEWVPITKLGRLVKENKIKSLED
IYLFSMAIKEFQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAV
GDESGHVGLGVKCAKEV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013810	Ribosomal_S5_N
IPR000851	Ribosomal_S5