prot_H-elongata_contig70027.14656.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig70027.14656.1
Unique Name	prot_H-elongata_contig70027.14656.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	344

Homology

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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: D7FS68_ECTSI (RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS68_ECTSI)

HSP 1 Score: 607 bits (1566), Expect = 9.220e-216
Identity = 300/343 (87.46%), Postives = 321/343 (93.59%), Query Frame = 0

Query:    1 MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 343
            MG+DWSIREGYAWVEDKEHCEEYGRMLQADPTKA            RRAKIRGLPQLGTLGAGNHYAEIQVVEE++D+QAAK+MGID++ QVCIMIHSGSRGLGHQVATDALV MEAAM RDNI  NDRQLACAKINS+EGQDYLAGMAAAANYAWVNR+ MTFLTRRAFSK+FGKTA+ELDMHVVYDVSHNIAK+EQH+++G+LKTLLVHRKGATRAFPPHHPLIP+DYQF GQPVIVGGTMGTCSYVLTGTQKGM+ETFGSTCHGAGRAKSRNESRKTL YEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCH+A +S +AVKLRPIAVIKG
Sbjct:  174 MGIDWSIREGYAWVEDKEHCEEYGRMLQADPTKA------------RRAKIRGLPQLGTLGAGNHYAEIQVVEEVYDEQAAKKMGIDKVNQVCIMIHSGSRGLGHQVATDALVLMEAAMARDNIDINDRQLACAKINSQEGQDYLAGMAAAANYAWVNRAMMTFLTRRAFSKKFGKTAEELDMHVVYDVSHNIAKVEQHIVDGDLKTLLVHRKGATRAFPPHHPLIPVDYQFTGQPVIVGGTMGTCSYVLTGTQKGMDETFGSTCHGAGRAKSRNESRKTLDYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHDAGVSMRAVKLRPIAVIKG 504

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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: A0A7S3M965_9STRA (RNA-splicing ligase RtcB homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M965_9STRA)

HSP 1 Score: 561 bits (1445), Expect = 4.620e-197
Identity = 273/343 (79.59%), Postives = 305/343 (88.92%), Query Frame = 0

Query:    1 MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 343
            MGMDWS+REGYAW EDKEHCEEYGRMLQADPTK           VS RAK RGLPQLGTLGAGNHY EIQVV+E+FD+QAA RMGID+IGQVCIMIHSGSRGLGHQVATDAL  MEAAM RD + TNDRQLACA+INS EGQDYLAGMAAAANYAWVNRS+MTFL R+AF+KQF +   +LDMHVVYDVSHNIAK+EQH+++G++KTLLVHRKG+TRAFPPHHPLIP+DYQF+GQPV++GGTMGTCSYVLTGTQ GM+ETFGSTCHGAGRA+SRN SR+TL Y+ VL  L  +GI+IRVASPKLVMEEAPESYKDVT+VV+TCH A ISKK +KLRPIAVIKG
Sbjct:  193 MGMDWSVREGYAWAEDKEHCEEYGRMLQADPTK-----------VSARAKKRGLPQLGTLGAGNHYCEIQVVDEIFDQQAAARMGIDKIGQVCIMIHSGSRGLGHQVATDALTAMEAAMTRDKLVTNDRQLACARINSPEGQDYLAGMAAAANYAWVNRSSMTFLVRQAFAKQFNREPDDLDMHVVYDVSHNIAKVEQHMVDGKMKTLLVHRKGSTRAFPPHHPLIPVDYQFIGQPVLIGGTMGTCSYVLTGTQTGMDETFGSTCHGAGRAQSRNASRRTLEYQEVLDKLASQGIAIRVASPKLVMEEAPESYKDVTQVVDTCHAAGISKKCIKLRPIAVIKG 524

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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: RTCB_OSTTA (RNA-splicing ligase RtcB homolog n=6 Tax=Ostreococcus TaxID=70447 RepID=RTCB_OSTTA)

HSP 1 Score: 548 bits (1411), Expect = 4.950e-192
Identity = 265/343 (77.26%), Postives = 301/343 (87.76%), Query Frame = 0

Query:    1 MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 343
            MGMDWS+REGYAW EDKEH EEYGRML ADP+K           VS RAK RGLPQ+GTLGAGNHYAEIQVV+E++D+ AAK+MGIDR+GQVCIMIHSGSRGLGHQVATD+L  ME AM+RD I  NDRQLACA+I+S+EGQDYLA MA AANYAWVNRS+MTFL R+AF+K FGK   ELDMHVVYDVSHNIAK E+H+++GE+KTLLVHRKG+TRAFPPHHPLIP+DYQ+ GQPV++GGTMGTCSY+LTGT+KGM +TFGSTCHGAGRA+SRN+SR  L YE VL  L+ KGI+IRVASPKLVMEEAPESYKDVTEVVNTCH+A ISKK VKLRPIAV+KG
Sbjct:  184 MGMDWSLREGYAWAEDKEHTEEYGRMLNADPSK-----------VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIYDEFAAKKMGIDRVGQVCIMIHSGSRGLGHQVATDSLTAMERAMERDGIEVNDRQLACARISSQEGQDYLAAMACAANYAWVNRSSMTFLCRQAFAKMFGKPPDELDMHVVYDVSHNIAKFEEHMVDGEMKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMRDTFGSTCHGAGRARSRNKSRHVLQYEDVLEKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKCVKLRPIAVVKG 515

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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: RTCB_MICCC (RNA-splicing ligase RtcB homolog n=3 Tax=Micromonas TaxID=38832 RepID=RTCB_MICCC)

HSP 1 Score: 545 bits (1405), Expect = 3.770e-191
Identity = 266/343 (77.55%), Postives = 299/343 (87.17%), Query Frame = 0

Query:    1 MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 343
            MGMDWS+REGYAW EDKEHCEEYGRML ADP K           VS RAK RGLPQ+GTLGAGNHYAEIQVV+E+FDK AA +MGI+R+GQV +MIHSGSRGLGHQVATDAL +ME AM RD I  NDRQLACAKI+S EGQ+YL+ M+ AANYAWVNRS+MTFL R+AF+K F +T  +LDMHVVYDVSHNIAKIE+HV++GELKTLLVHRKG+TRAFPPHHPLIP+DYQ+ GQPV++GGTMGTCSY+LTGT+KGMEETFGSTCHGAGRA+SRN SR  L Y  VL  L+ KGI+IRVASPKLVMEEAPESYKDVTEVVNTCH+A ISKKAVKLRPIAV+KG
Sbjct:  182 MGMDWSLREGYAWAEDKEHCEEYGRMLNADPNK-----------VSARAKKRGLPQMGTLGAGNHYAEIQVVDEIFDKHAADKMGIERLGQVMVMIHSGSRGLGHQVATDALTEMERAMARDGILVNDRQLACAKISSPEGQNYLSAMSCAANYAWVNRSSMTFLCRQAFAKMFDQTPDDLDMHVVYDVSHNIAKIEEHVVDGELKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLIGGTMGTCSYILTGTEKGMEETFGSTCHGAGRARSRNNSRNKLDYTEVLEKLKTKGIAIRVASPKLVMEEAPESYKDVTEVVNTCHDAGISKKAVKLRPIAVVKG 513

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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: UPI0009E47FBE (tRNA-splicing ligase RtcB homolog n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E47FBE)

HSP 1 Score: 541 bits (1393), Expect = 1.810e-190
Identity = 263/343 (76.68%), Postives = 299/343 (87.17%), Query Frame = 0

Query:    1 MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 343
            MGMDWS+REGYAW EDKEHCEEYGRMLQADP K           VS RAK RGLPQLGTLGAGNHYAEIQ+V+E+++  AAK+MG+D  GQVC+MIHSGSRGLGHQVATDALV ME AM RD I  NDRQLACA+I+S+EG+DYL GMAAAANYAWVNRSTMTFLTR+AF K F  T  +LDMHV+YDVSHNIAKIE+H+L+GE KTLLVHRKG+TRAFPPHHPLIP+DYQ  GQPV++GGTMGTCSYVLTGT+KGM++TFG+TCHGAGRA SR +SR+ L Y+ VL  L+ KGISIRVASPKLVMEEAPESYK+VT+VVNTCH+A IS+KA+KLRPIAVIKG
Sbjct:  107 MGMDWSLREGYAWAEDKEHCEEYGRMLQADPDK-----------VSPRAKKRGLPQLGTLGAGNHYAEIQIVDEIYNTYAAKKMGVDHRGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIDVNDRQLACARIHSQEGEDYLKGMAAAANYAWVNRSTMTFLTRQAFGKVFKSTPDDLDMHVIYDVSHNIAKIEEHMLDGEQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMKQTFGTTCHGAGRALSRAKSRRNLDYQEVLDALKSKGISIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISQKAIKLRPIAVIKG 438

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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: K8FAV9_9CHLO (RNA-splicing ligase RtcB homolog n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FAV9_9CHLO)

HSP 1 Score: 544 bits (1402), Expect = 1.940e-190
Identity = 265/343 (77.26%), Postives = 304/343 (88.63%), Query Frame = 0

Query:    1 MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 343
            MG+DW +REGYAW+EDKE CEE GRML ADP+K           VS+RAK RGLPQ+GTLGAGNHYAEIQVV+E++D+ AAK+MGID+IGQV +MIHSGSRGLGHQVATDALV+ME AM +D +  NDRQLACA+INS+EG+DYLA MA AANYAWVNR +MTFL R+AF+K F KTA++LDMHVVYDVSHNIAKIE+H+++GELKTLLVHRKG+TRAFPPHHPLIP+DYQ+ GQPV+VGGTMGTCSYVLTGT+KGM ETFGSTCHGAGRA+SR+ SR+ LSYE VL  L+ KGISIRVASPKLVMEEAPESYKDVTEVV+TCH+A ISKK VKLRPIAVIKG
Sbjct:  199 MGIDWCVREGYAWIEDKERCEENGRMLNADPSK-----------VSQRAKKRGLPQMGTLGAGNHYAEIQVVDEIYDQFAAKKMGIDKIGQVVVMIHSGSRGLGHQVATDALVEMEKAMAKDGLELNDRQLACARINSQEGKDYLAAMACAANYAWVNRQSMTFLCRQAFAKTFNKTAEQLDMHVVYDVSHNIAKIEEHIVDGELKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLVGGTMGTCSYVLTGTEKGMHETFGSTCHGAGRARSRHNSRQKLSYEQVLENLKTKGISIRVASPKLVMEEAPESYKDVTEVVDTCHDAGISKKCVKLRPIAVIKG 530

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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: W7TEQ9_9STRA (RNA-splicing ligase RtcB homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEQ9_9STRA)

HSP 1 Score: 543 bits (1400), Expect = 1.950e-190
Identity = 267/343 (77.84%), Postives = 298/343 (86.88%), Query Frame = 0

Query:    1 MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 343
            MGMDWS+REGYAW ED EHCEE GRM QADPTK           V  RAK RGLPQLGTLGAGNHYAEIQVVEE+ D +AA RMGID+IGQVC+MIHSGSRGLGHQVATDALV+ME AM RD I TNDRQLACA+I S EGQ+YLA MAAAAN+AWVNRS+MTFLTR+AF+K F  T  +LDMHV+YDVSHNIAK+E+H+  G  KTLLVHRKG+TRAFPP+HPLIP+DYQF GQPV++GGTMGTCSYVLTGT KG+EETFGSTCHGAGRA+SRN+SRKTL Y  VL  LE+KGISIRVASPKLVMEEAPESYKDVT+VV+TCHEA IS+KA+KLRPIAV+KG
Sbjct:  179 MGMDWSLREGYAWAEDNEHCEENGRMRQADPTK-----------VGMRAKKRGLPQLGTLGAGNHYAEIQVVEEIHDPRAAARMGIDQIGQVCVMIHSGSRGLGHQVATDALVEMERAMARDGILTNDRQLACARIQSPEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFEATPDDLDMHVIYDVSHNIAKVEEHMYQGRPKTLLVHRKGSTRAFPPNHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTDKGLEETFGSTCHGAGRAQSRNKSRKTLEYTEVLAALEEKGISIRVASPKLVMEEAPESYKDVTQVVDTCHEAGISRKAIKLRPIAVVKG 510

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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: A0A7T8HKN5_CALRO (tRNA-splicing ligase RtcB -like protein n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8HKN5_CALRO)

HSP 1 Score: 536 bits (1381), Expect = 3.970e-190
Identity = 262/343 (76.38%), Postives = 298/343 (86.88%), Query Frame = 0

Query:    1 MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 343
            MGMDWS+REGY W EDKEHCEEYGRML ADP             VS RAK RGLPQLGTLGAGNHYAEIQVV+E+FDK AA  MGID++GQ+ +MIH GSRG GHQVATDALVQME AM RDNI  NDRQLACA+I+SKEGQDYL GMAAAAN+AWVNRS+MTFLTR+AF+K F  +  +LDMHV+YDVSHNIAK+E+H+++G+LK+LLVHRKG+TRAFPPHHPLIP+D+Q  GQPV++GGTMG+CSYVLTGT+KGM++TFGSTCHGAGRA SR +SR+ L Y+AVL  LEKKGISIRVASPKLVMEEAPESYKDVT+VVNTCH A ISKKAVKLRPI VIKG
Sbjct:   12 MGMDWSLREGYVWPEDKEHCEEYGRMLNADPN-----------CVSTRAKRRGLPQLGTLGAGNHYAEIQVVDEIFDKFAASSMGIDQLGQIVVMIHCGSRGFGHQVATDALVQMEKAMKRDNILVNDRQLACARIHSKEGQDYLKGMAAAANFAWVNRSSMTFLTRQAFAKVFDSSPDDLDMHVIYDVSHNIAKMEEHLVDGKLKSLLVHRKGSTRAFPPHHPLIPVDFQLTGQPVLIGGTMGSCSYVLTGTEKGMQQTFGSTCHGAGRAWSRAKSRRNLDYQAVLDDLEKKGISIRVASPKLVMEEAPESYKDVTDVVNTCHAAGISKKAVKLRPIGVIKG 343

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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: A0A7J7JRD7_BUGNE (RNA-splicing ligase RtcB homolog n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JRD7_BUGNE)

HSP 1 Score: 538 bits (1387), Expect = 5.640e-189
Identity = 261/343 (76.09%), Postives = 297/343 (86.59%), Query Frame = 0

Query:    1 MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 343
            MGMDWS+REGYAWVEDKEHCEEYGRMLQADP K           VS RAK RGLPQLGTLGAGNHYAEIQVV+E++DK AA +MG+D  GQVC+MIHSGSRGLGHQVATDALV ME AM RD I  NDRQLACA+I+S EGQDYL GMA+AANYAWVNRS+MTFLTR+AF+K F  T  +LDMHV+YDVSHNIAK+E+H ++G+ +TLLVHRKG+TRAFPPHHPLIP+DYQ  GQPV++GGTMGTCSYVLTGT+ GM ETFGSTCHGAGRA SR +SR+++ +E VL  L++KGISIRVASPKLVMEEAPESYK+VT+VVNTCH A IS+K VKLRPIAVIKG
Sbjct:  145 MGMDWSLREGYAWVEDKEHCEEYGRMLQADPRK-----------VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKHAASKMGLDYKGQVCVMIHSGSRGLGHQVATDALVSMEKAMKRDQIEVNDRQLACARISSTEGQDYLKGMASAANYAWVNRSSMTFLTRQAFAKMFNSTPDDLDMHVIYDVSHNIAKVEEHFIDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEVGMSETFGSTCHGAGRALSRAKSRRSIGFEQVLASLQEKGISIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISRKCVKLRPIAVIKG 476

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BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Match: A0A7S0RKU3_9CHLO (RNA-splicing ligase RtcB homolog n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RKU3_9CHLO)

HSP 1 Score: 540 bits (1390), Expect = 7.160e-189
Identity = 265/343 (77.26%), Postives = 294/343 (85.71%), Query Frame = 0

Query:    1 MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAKIRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGSRGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAAAANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHVLNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVLTGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVASPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG 343
            MGMDWS+REGYAW EDKEHCEEYGRML A+P K           VS RAK RGLPQLGTLGAGNHYAEIQVV+E+FDK AA +MGID+IGQVCIMIHSGSRG GHQVATDAL  ME AM    I TNDRQLACA+INS+EGQDYL  MA AANYAWVNRS+MTFLTR+AF+KQF  T  +LDMHVVYDVSHNIAKIE+H+++G  K LLVHRKG+TRAFPPHHPLIP+DYQF GQPV++GGTMGTCSYVLTGT+KGMEETFGSTCHGAGRA+SRN +R  L Y  VL GL++KGI+IRVASPKLVMEEAPESYKDVT VV+TCH A ISKK +KLRPIAV+KG
Sbjct:  182 MGMDWSLREGYAWAEDKEHCEEYGRMLTANPNK-----------VSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIFDKSAANKMGIDQIGQVCIMIHSGSRGFGHQVATDALSAMERAMAMQGIHTNDRQLACARINSQEGQDYLEAMACAANYAWVNRSSMTFLTRQAFAKQFNCTPDDLDMHVVYDVSHNIAKIEEHMVDGVQKRLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGGTMGTCSYVLTGTEKGMEETFGSTCHGAGRARSRNNARNKLDYTQVLAGLKQKGIAIRVASPKLVMEEAPESYKDVTAVVDTCHMAGISKKTIKLRPIAVVKG 513

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot

BLAST of mRNA_H-elongata_contig70027.14656.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FS68_ECTSI	9.220e-216	87.46	RNA-splicing ligase RtcB homolog n=2 Tax=Ectocarpu...	[more]
A0A7S3M965_9STRA	4.620e-197	79.59	RNA-splicing ligase RtcB homolog n=1 Tax=Spumella ...	[more]
RTCB_OSTTA	4.950e-192	77.26	RNA-splicing ligase RtcB homolog n=6 Tax=Ostreococ...	[more]
RTCB_MICCC	3.770e-191	77.55	RNA-splicing ligase RtcB homolog n=3 Tax=Micromona...	[more]
UPI0009E47FBE	1.810e-190	76.68	tRNA-splicing ligase RtcB homolog n=1 Tax=Orbicell...	[more]
K8FAV9_9CHLO	1.940e-190	77.26	RNA-splicing ligase RtcB homolog n=1 Tax=Bathycocc...	[more]
W7TEQ9_9STRA	1.950e-190	77.84	RNA-splicing ligase RtcB homolog n=2 Tax=Monodopsi...	[more]
A0A7T8HKN5_CALRO	3.970e-190	76.38	tRNA-splicing ligase RtcB -like protein n=1 Tax=Ca...	[more]
A0A7J7JRD7_BUGNE	5.640e-189	76.09	RNA-splicing ligase RtcB homolog n=1 Tax=Bugula ne...	[more]
A0A7S0RKU3_9CHLO	7.160e-189	77.26	RNA-splicing ligase RtcB homolog n=1 Tax=Pyramimon...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001233	tRNA-splicing ligase, RtcB	PFAM	PF01139	RtcB	coord: 2..343 e-value: 3.1E-108 score: 362.6
IPR001233	tRNA-splicing ligase, RtcB	PANTHER	PTHR11118	UNCHARACTERIZED	coord: 1..343
IPR036025	tRNA-splicing ligase RtcB-like superfamily	GENE3D	3.90.1860.10		coord: 1..343 e-value: 3.2E-133 score: 447.2
IPR036025	tRNA-splicing ligase RtcB-like superfamily	SUPERFAMILY	103365	Hypothetical protein PH1602	coord: 2..343

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig70027	contig	H-elongata_contig70027:325..2930 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig70027.14656.1	mRNA_H-elongata_contig70027.14656.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig70027 325..2933 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig70027.14656.1 ID=prot_H-elongata_contig70027.14656.1|Name=mRNA_H-elongata_contig70027.14656.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=344bp
MGMDWSIREGYAWVEDKEHCEEYGRMLQADPTKARPDSFSQDKHVSRRAK
IRGLPQLGTLGAGNHYAEIQVVEEMFDKQAAKRMGIDRIGQVCIMIHSGS
RGLGHQVATDALVQMEAAMDRDNIRTNDRQLACAKINSKEGQDYLAGMAA
AANYAWVNRSTMTFLTRRAFSKQFGKTAKELDMHVVYDVSHNIAKIEQHV
LNGELKTLLVHRKGATRAFPPHHPLIPLDYQFMGQPVIVGGTMGTCSYVL
TGTQKGMEETFGSTCHGAGRAKSRNESRKTLSYEAVLGGLEKKGISIRVA
SPKLVMEEAPESYKDVTEVVNTCHEANISKKAVKLRPIAVIKG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001233	RtcB
IPR036025	RtcB-like_sf