prot_H-elongata_contig69824.14629.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig69824.14629.1
Unique Name	prot_H-elongata_contig69824.14629.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	193

Homology

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BLAST of mRNA_H-elongata_contig69824.14629.1 vs. uniprot
Match: D8LTJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTJ3_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 3.270e-47
Identity = 99/193 (51.30%), Postives = 115/193 (59.59%), Query Frame = 0

Query:    1 LDGQSGDLLWGAQFGSGQDDQAVGLVLGPNSAPPPSHHSHLSDRWDGNPPLYLTGWTRGALYSSVPARWQDGWVVKLSNPPPETLRVAGASYGDHGGGGGTEVVPTPGTTGAGTSAASDAARGAVTLGFVSTLTGMATLVLGALCIFLRRATNSGGALAPSRQEQLKGSLFRRRNRANTQDAGAMKGAGGNGK 193
            LDG+SG L+WG QFGSG DDQAVGLVLGP S+        L     G  PLYLTGWTRGAL+S  PARWQDGW VKL NPPP TL VA A   +       E +P P  +GA  +  + A RGAVT G V T+TGM  +V   L   LR+A  +GGAL+  +       +FRRR R    D G  KG GG GK
Sbjct:   57 LDGESGGLVWGEQFGSGADDQAVGLVLGPVSSAAADAVGSLEQEQGGGSPLYLTGWTRGALFSKQPARWQDGWAVKLPNPPPSTLGVADAGAWE-------EPLPVPIGSGAAEAQQAAAERGAVTAGLVGTVTGMLVVVSICLYFVLRKANMAGGALSALKDPDPTKGMFRRRGRPMLHDGGG-KGVGGAGK 241

[Close]

BLAST of mRNA_H-elongata_contig69824.14629.1 vs. uniprot
Match: A0A6H5KWN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWN4_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 4.510e-43
Identity = 99/198 (50.00%), Postives = 117/198 (59.09%), Query Frame = 0

Query:    1 LDGQSGDLLWGAQFGSGQDDQAVGLVLGPNSAPPPSHHSHLSDRWDGNPPLYLTGWTRGALYSSVPARWQDGWVVKLSNPPPETLRVAGASYGDHGGGGGTEVVPTPGTTGAGTSAASDAARGAVTLGFVSTLTGMATLVLGALCIFLRRATNSGGALAPSRQEQLKG-----SLFRRRNRANTQDAGAMKGAGGNGK 193
            LDG+SG L+WG QFGSG DDQAVGLVLGP S         L     G  PLYLTGWTRGAL+S  PARWQDGW VKL NPPP TL VA     +       + +P P  +GA  +  + A RGAVT G V T+TGM  +V   L   LR+A  +GGAL+  R + +K       +FRRR R    D+G  KG GG GK
Sbjct:  362 LDGESGALVWGEQFGSGADDQAVGLVLGPVSFAAGDAVGSLEQEKGGGSPLYLTGWTRGALFSKEPARWQDGWAVKLPNPPPSTLGVADTGAWE-------KPLPVPIGSGAAEAQQAAAERGAVTAGLVGTVTGMLVVVSICLYFVLRKANMTGGALSAPRYDSVKDLDPTKGMFRRRGRPMLHDSGG-KGQGGGGK 551

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig69824.14629.1 vs. uniprot

BLAST of mRNA_H-elongata_contig69824.14629.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LTJ3_ECTSI	3.270e-47	51.30	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KWN4_9PHAE	4.510e-43	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 149..193
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 124..148
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..123
None	No IPR available	TMHMM	TMhelix		coord: 126..148

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig69824	contig	H-elongata_contig69824:249..2323 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig69824.14629.1	mRNA_H-elongata_contig69824.14629.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig69824 249..2323 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig69824.14629.1 ID=prot_H-elongata_contig69824.14629.1|Name=mRNA_H-elongata_contig69824.14629.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
LDGQSGDLLWGAQFGSGQDDQAVGLVLGPNSAPPPSHHSHLSDRWDGNPP
LYLTGWTRGALYSSVPARWQDGWVVKLSNPPPETLRVAGASYGDHGGGGG
TEVVPTPGTTGAGTSAASDAARGAVTLGFVSTLTGMATLVLGALCIFLRR
ATNSGGALAPSRQEQLKGSLFRRRNRANTQDAGAMKGAGGNGK