prot_H-elongata_contig6966.14615.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig6966.14615.1
Unique Name	prot_H-elongata_contig6966.14615.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	107

Homology

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BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.590e-40
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 0

Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 107
            LLDE+  ++YQ I G LMY+AQV RYDI+YA  QLAR M+KPSK +M AAKH L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct:  209 LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFR 315

[Close]

BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 9.550e-40
Identity = 69/107 (64.49%), Postives = 88/107 (82.24%), Query Frame = 0

Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 107
            LLDE+  ++YQ I G LMY+AQV RYDI+YA  QLAR+M+KPSK +M AAKH L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct:  430 LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFR 536

[Close]

BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.950e-39
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 0

Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 107
            LLDE+  ++YQ I G LMY+AQV RYDI+YA  QLAR M+KPSK +M AAKH L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct: 1438 LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFR 1544

[Close]

BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.560e-39
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 0

Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 107
            LLDE+  ++YQ I G LMY+AQV RYDI+YA  QLAR M+KPSK +M AAKH L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct:  769 LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFR 875

[Close]

BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.840e-37
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = 0

Query:   13 ITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 107
            I G LMY+AQV RYDI+YA  QLAR M+KPSK +M AAKH L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct:   98 IVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFR 192

[Close]

BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.600e-36
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 0

Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 107
            LL E+  +RYQ I G LMY+AQV RYDI+YA  QLAR M KPSK +M AAKH L Y+AG+ NF IT +  GFKL T++D+NW  NPDNGKSTS Y+ +L N P+S K
Sbjct:  300 LLGEEETRRYQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVSLK 406

[Close]

BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 3.460e-35
Identity = 62/107 (57.94%), Postives = 84/107 (78.50%), Query Frame = 0

Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 107
            LL+++  +RYQ I G L+YL+Q+ RYDI+YA +QLAR M+KPSK++MGAAK    YLAG+  F I  +RGGFKLT +TD+NW  NPDNGKSTSS++ +L + P++FK
Sbjct:  492 LLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFK 598

[Close]

BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 4.970e-35
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 0

Query:    1 LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 107
            LL+ +GKQRYQ+I G +MYLAQV+RYDI+Y  +Q ARAMS PSK +MGAAKH+L YL+GS +FSIT +RGGF LT  ++AN   N DNGKS SSYIM+++  P S K
Sbjct:  550 LLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLK 656

[Close]

BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 4.180e-33
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 0

Query:   12 SITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 107
            +I G ++YLAQ++RYDI+Y  +QLARAMS PSK +MGAAKH+L YL+GS +FSIT +RGGF LT  +DANW  NPDN KS SSYIM+++  P+SFK
Sbjct:  474 AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFK 569

[Close]

BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.550e-32
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 0

Query:   18 MYLAQVSRYDILYAVNQLARAMSKPSKSYMGAAKHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILANGPISFK 107
            MY+AQV RYDI+YA   LAR M+KPSK +   AK  L YLAG+ +FSIT ++GGFKL T++D+NW  NPDNGKSTSSY+ +LAN P+SF+
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFR 90

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot

BLAST of mRNA_H-elongata_contig6966.14615.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L5U2_9PHAE	1.590e-40	64.49	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JME8_9PHAE	9.550e-40	64.49	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KJH6_9PHAE	1.950e-39	64.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KNH5_9PHAE	3.560e-39	64.49	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KNV2_9PHAE	4.840e-37	66.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KPN4_9PHAE	1.600e-36	60.75	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JG39_9PHAE	3.460e-35	57.94	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L6R7_9PHAE	4.970e-35	62.62	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KBU1_9PHAE	4.180e-33	63.54	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KMK0_9PHAE	2.550e-32	62.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 9..105
None	No IPR available	PANTHER	PTHR11439:SF275		coord: 9..105

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig6966	contig	H-elongata_contig6966:830..1150 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig6966.14615.1	mRNA_H-elongata_contig6966.14615.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig6966 830..1150 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig6966.14615.1 ID=prot_H-elongata_contig6966.14615.1|Name=mRNA_H-elongata_contig6966.14615.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
LLDEQGKQRYQSITGVLMYLAQVSRYDILYAVNQLARAMSKPSKSYMGAA
KHVLWYLAGSANFSITNRRGGFKLTTYTDANWVGNPDNGKSTSSYIMILA
NGPISFK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR039537	Retrotran_Ty1/copia-like