prot_H-elongata_contig69617.14609.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig69617.14609.1
Unique Name	prot_H-elongata_contig69617.14609.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	111

Homology

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BLAST of mRNA_H-elongata_contig69617.14609.1 vs. uniprot
Match: A0A836CLI3_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLI3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.490e-7
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query:   72 YPLGSSGPHQAVMLFANSIVGAGVICMPFALLQCGFWTGI 111
            YP G SG   AV  F N+IVGAG+I +PFA+LQCGFWTG+
Sbjct:   74 YPEGHSGHWGAVFNFVNTIVGAGIIGLPFAILQCGFWTGL 113

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BLAST of mRNA_H-elongata_contig69617.14609.1 vs. uniprot
Match: D8LFS4_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS4_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 3.990e-5
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 0

Query:   70 ERYPLGSSGPHQAVMLFANSIVGAGVICMPFALLQCGFWTGI 111
            ERYP G+S    AV  F N+IVGAG+I +PFAL + G W G+
Sbjct:   38 ERYPAGNSSAAGAVSNFVNTIVGAGIIGLPFALAESGLWAGV 79

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig69617.14609.1 vs. uniprot

BLAST of mRNA_H-elongata_contig69617.14609.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CLI3_9STRA	1.490e-7	65.00	Transmembrane amino acid transporter protein-domai...	[more]
D8LFS4_ECTSI	3.990e-5	54.76	Aa_trans domain-containing protein n=2 Tax=Ectocar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 82..103
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 104..111
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..81
None	No IPR available	TMHMM	TMhelix		coord: 81..103

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig69617	contig	H-elongata_contig69617:1249..2515 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig69617.14609.1	mRNA_H-elongata_contig69617.14609.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig69617 1249..2531 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig69617.14609.1 ID=prot_H-elongata_contig69617.14609.1|Name=mRNA_H-elongata_contig69617.14609.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MANIGPRQYESLQGGHDKNELEMVVVGTESSVVVEQAELISSEKEPNQRL
ADSFYRYPPGNGDPGGYSTERYPLGSSGPHQAVMLFANSIVGAGVICMPF
ALLQCGFWTGI