prot_H-elongata_contig69109.14558.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig69109.14558.1
Unique Nameprot_H-elongata_contig69109.14558.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A6H5KX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX88_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.860e-17
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:   29 MTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 74
            +TFMQHD GLDRRL+KAVAKMGFVYPTLVQ K IPLAL+GKDLLVR
Sbjct:   43 LTFMQHDFGLDRRLVKAVAKMGFVYPTLVQNKCIPLALRGKDLLVR 88          
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: D7FNE7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 4.920e-17
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:   29 MTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 74
            +TFMQHD GLDRRL+KAVAKMGFVYPTLVQ K IPLAL+GKDLLVR
Sbjct:   45 LTFMQHDFGLDRRLVKAVAKMGFVYPTLVQNKCIPLALRGKDLLVR 90          
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A835ZDE1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.100e-15
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0
Query:   26 DQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 74
            DQ  TF QHD GLDRRLIKA AK GF+YPTLVQ K IPLAL+GKDLLVR
Sbjct:    8 DQAKTFAQHDFGLDRRLIKACAKAGFIYPTLVQSKCIPLALKGKDLLVR 56          
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A4D9D1T0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1T0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.380e-13
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0
Query:   30 TFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 74
            TF   D GLDRRLIKAV++MGF+YPTLVQ K+IPLA++GKDLLVR
Sbjct:    9 TFSAFDFGLDRRLIKAVSRMGFIYPTLVQSKAIPLAMEGKDLLVR 53          
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: W7TVX7_9STRA (Putative atp-dependent rna helicase ddx56 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVX7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.620e-13
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 0
Query:   30 TFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 74
            TF   D GLDRRLIKAV++MGF+YPTLVQ K+IPLA++GKDLLVR
Sbjct:    9 TFSAFDFGLDRRLIKAVSRMGFIYPTLVQSKAIPLAMEGKDLLVR 53          
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A7S3H840_9STRA (ATP-dependent RNA helicase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H840_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.130e-13
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 0
Query:   26 DQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 74
            D+  T+MQ D GLDRRL+KA++K+GF YPTLVQ K IP+ +QGKD+LVR
Sbjct:   17 DEEKTWMQRDFGLDRRLVKALSKLGFTYPTLVQAKCIPIIVQGKDVLVR 65          
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A7S1XXZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXZ4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.600e-11
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 0
Query:   22 QAPEDQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 74
            +A  D+ +TF   D GLD RL+KA  ++GFV PTLVQ + IPLAL GKDLLVR
Sbjct:   30 EATPDEELTFAGSDWGLDGRLLKACMRLGFVRPTLVQAQCIPLALAGKDLLVR 82          
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A482SEZ2_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEZ2_9ARCH)

HSP 1 Score: 66.2 bits (160), Expect = 5.670e-11
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 0
Query:   23 APEDQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 74
            +P D    ++Q+   LDRRL+KA++K+GF YPTLVQ K +PLAL+GKDL+VR
Sbjct:   45 SPFDTSTPWLQNAYQLDRRLLKAISKLGFTYPTLVQAKCVPLALEGKDLMVR 96          
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A7R9UC43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC43_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.130e-10
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 0
Query:   24 PEDQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 74
            PE  P TF   D GLD RL+KAV ++GFV PTLVQ + IPLALQGKDLLVR
Sbjct:    6 PETSP-TFATSDWGLDPRLLKAVMRLGFVRPTLVQSQCIPLALQGKDLLVR 55          
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A8K1FD86_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD86_PYTOL)

HSP 1 Score: 64.7 bits (156), Expect = 2.880e-10
Identity = 34/49 (69.39%), Postives = 35/49 (71.43%), Query Frame = 0
Query:   26 DQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 74
            D   TF   D GLD RL KAVAKM FVY TLVQ   IPLA+QGKDLLVR
Sbjct:   11 DAKQTFASCDFGLDTRLTKAVAKMQFVYATLVQVHCIPLAMQGKDLLVR 59          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX88_9PHAE4.860e-1786.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNE7_ECTSI4.920e-1786.96DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835ZDE1_9STRA1.100e-1579.59DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A4D9D1T0_9STRA1.380e-1375.56Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TVX7_9STRA1.620e-1375.56Putative atp-dependent rna helicase ddx56 n=1 Tax=... [more]
A0A7S3H840_9STRA2.130e-1365.31ATP-dependent RNA helicase (Fragment) n=1 Tax=Spum... [more]
A0A7S1XXZ4_9STRA2.600e-1160.38Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A482SEZ2_9ARCH5.670e-1157.69DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906... [more]
A0A7R9UC43_9STRA1.130e-1068.63Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8K1FD86_PYTOL2.880e-1069.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 3..76
e-value: 6.2E-10
score: 40.4
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 31..59
score: 8.554
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 34..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69109contigH-elongata_contig69109:2318..2569 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69109.14558.1mRNA_H-elongata_contig69109.14558.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig69109 1662..2965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig69109.14558.1 ID=prot_H-elongata_contig69109.14558.1|Name=mRNA_H-elongata_contig69109.14558.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MPSLRNEGKRRRDEVERLEGQQAPEDQPMTFMQHDMGLDRRLIKAVAKMG
FVYPTLVQCKSIPLALQGKDLLVRFVFYSSVSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase