prot_H-elongata_contig69000.14543.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig69000.14543.1
Unique Nameprot_H-elongata_contig69000.14543.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length136
Homology
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 107 bits (267), Expect = 1.050e-26
Identity = 54/134 (40.30%), Postives = 84/134 (62.69%), Query Frame = 0
Query:   10 WQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAY--------RDSRKQVGLLKKAMYGLVHAGLLW 135
            W +V+RP+GKTV+ +R VF+ K+  DG +E+ K RLVA+GF Q+ G HY E+ +     +SIR V+++ A    E  QLD   AYL  ++E+EIY+E+P+          +D   +V  ++KA+YGL  +G +W
Sbjct:   49 WTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMW 182          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 114 bits (284), Expect = 1.120e-26
Identity = 56/128 (43.75%), Postives = 85/128 (66.41%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 135
            GV++ V RP+ + ++ ++ VFK K   DG++EKYK RLVAQGF QV+GI Y E+ +P     SIR++L++ A   WE  Q+D+  A+L  ++E+EIY+++P  ++ S   V  LKKA+YGL  A   W
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREW 1152          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A117NI32_PICGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Picea glauca TaxID=3330 RepID=A0A117NI32_PICGL)

HSP 1 Score: 106 bits (264), Expect = 1.430e-25
Identity = 52/129 (40.31%), Postives = 84/129 (65.12%), Query Frame = 0
Query:    9 VWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQ--VGLLKKAMYGLVHAGLLW 135
            VW++V RP+GK V++++ +FK K   DG I KYK R VA+GF Q +G++YEE+ +P     SIR ++++ + +G +  Q+D+  A+L   +E+E+Y+E P+ +    K+  V  LKKA+YGL  A   W
Sbjct:   78 VWEIVPRPEGKPVVTSKWIFKIKHTADGSIYKYKARFVARGFSQTEGVYYEETFAPDARYTSIRSIIAIASVMGRKLHQMDVKTAFLNGVIEEEVYIEQPQGFESHGKESHVCRLKKALYGLKQAPRAW 206          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 109 bits (272), Expect = 4.550e-25
Identity = 53/127 (41.73%), Postives = 84/127 (66.14%), Query Frame = 0
Query:   10 WQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRK-QVGLLKKAMYGLVHAGLLW 135
            W+VV+ P  K  +  + ++K K + DG IE+YK RLVAQGF Q++GI Y+E  SP     S+R  L+++ A  WE  Q+D++ A+L  D+E+E+Y++LPE ++ + K +V  L+K++YGL  A   W
Sbjct:  582 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: UPI00192EECC5 (uncharacterized protein LOC120294339 n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EECC5)

HSP 1 Score: 107 bits (266), Expect = 4.980e-25
Identity = 50/128 (39.06%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 135
            G W++V+ P+GK ++  + VF  K   DG +E+YK RLVA+GF Q  G+ Y+E+ +P     S+R++LS+ AA  W   QLD+  A+L  D+E+E+++ LP  + ++  +V  LKK++YGL  +   W
Sbjct:   14 GTWKLVDAPEGKKIVGCKWVFTVKCKLDGSVERYKTRLVAKGFTQTYGVDYQETFAPVAKINSVRILLSLAAAFDWPLHQLDVKNAFLNGDLEEEVFMSLPPGFAETEGKVCRLKKSLYGLKQSPRAW 141          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 108 bits (270), Expect = 7.110e-25
Identity = 53/127 (41.73%), Postives = 84/127 (66.14%), Query Frame = 0
Query:   10 WQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRK-QVGLLKKAMYGLVHAGLLW 135
            W+VV+ P  K  +  + ++K K + DG IE+YK RLVAQGF Q++GI Y+E+ SP     S+R  L++  A  WE  Q+D++ A+L  D+E+E+Y++LPE ++ + K +V  L+K++YGL  A   W
Sbjct:  113 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A5BDW5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=16 Tax=Vitis vinifera TaxID=29760 RepID=A5BDW5_VITVI)

HSP 1 Score: 101 bits (252), Expect = 1.040e-24
Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = 0
Query:    9 VWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAY--RDSRKQVGLLKKAMYGLVHAGLLW 135
            VW +V+ P G   +  + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R++L+++A    E +Q+D+  A+L  ++E+E+Y++ PE +   D  + V  LKK++YGL  A   W
Sbjct:   13 VWDLVDLPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVSKLKKSIYGLKQASRQW 141          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 107 bits (268), Expect = 1.600e-24
Identity = 53/127 (41.73%), Postives = 83/127 (65.35%), Query Frame = 0
Query:   10 WQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRK-QVGLLKKAMYGLVHAGLLW 135
            W+VV+ P  K  +  + ++K K + DG IE+YK RLVAQGF Q++GI Y+E  SP     S+R  L++  A  WE  Q+D++ A+L  D+E+E+Y++LPE ++ + K +V  L+K++YGL  A   W
Sbjct:  836 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A0C2WM40_AMAMK (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WM40_AMAMK)

HSP 1 Score: 106 bits (265), Expect = 3.270e-24
Identity = 53/130 (40.77%), Postives = 81/130 (62.31%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQA--SIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 135
            G W++V+ P+GK ++  + VF +K D++GRI ++K RLVAQGF Q  G+ Y  + + AP     S+R  L++ A   WE RQ D+  AYL   +++EIY+  P  + D   +V  LKK++YGL  AG +W
Sbjct:   75 GTWELVDLPEGKNIVGCKWVFTKKRDEEGRINRFKARLVAQGFSQKPGVDYSNTGTFAPVMRFESLRTHLALAAVNNWELRQFDVKSAYLNGSLDEEIYMRQPPGFDDGSGRVCRLKKSIYGLKQAGNIW 204          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: J4VU23_BEAB2 (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Beauveria bassiana (strain ARSEF 2860) TaxID=655819 RepID=J4VU23_BEAB2)

HSP 1 Score: 105 bits (262), Expect = 3.690e-24
Identity = 53/131 (40.46%), Postives = 81/131 (61.83%), Query Frame = 0
Query:    5 IPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 135
            I    W VV+RP  + VL+ R VFKRK+  DG + ++K R V +GF Q+ G+ ++E+ +     AS R++ ++ A  GW+  Q+DI  A+L  ++E EI+VE PE Y ++R QV  L K++YGL  A   W
Sbjct:  143 IENQTWTVVKRPADRKVLTGRWVFKRKLGSDGEVARHKARFVVRGFSQIYGLDFDETYASVVKSASYRILFALQARYGWKCHQMDIKTAFLNGNLEHEIFVEPPEGYPEARNQVLKLCKSLYGLKQAPRQW 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9Y7J8_LYGHE1.050e-2640.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK1.120e-2643.75Integrase catalytic domain-containing protein (Fra... [more]
A0A117NI32_PICGL1.430e-2540.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438E4T4_VITVI4.550e-2541.73Retrovirus-related Pol polyprotein from transposon... [more]
UPI00192EECC54.980e-2539.06uncharacterized protein LOC120294339 n=1 Tax=Eucal... [more]
A0A438GNV2_VITVI7.110e-2541.73Retrovirus-related Pol polyprotein from transposon... [more]
A5BDW5_VITVI1.040e-2440.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5BCC7_VITVI1.600e-2441.73Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A0C2WM40_AMAMK3.270e-2440.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
J4VU23_BEAB23.690e-2440.46Retrotransposon protein, putative, Ty1-copia subcl... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..135
e-value: 5.4E-32
score: 111.4
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..128
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 10..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69000contigH-elongata_contig69000:1489..1896 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69000.14543.1mRNA_H-elongata_contig69000.14543.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig69000 1489..1908 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig69000.14543.1 ID=prot_H-elongata_contig69000.14543.1|Name=mRNA_H-elongata_contig69000.14543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGF
RQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVE
KEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like