prot_H-elongata_contig68758.14511.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig68758.14511.1
Unique Nameprot_H-elongata_contig68758.14511.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length42
Homology
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: D7FM82_ECTSI (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM82_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.370e-22
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0
Query:    1 MEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 41
            MEEMLQ+GPAGKEWGGPTRGGVL EPTRFGDWERKGRCSDF
Sbjct:   91 MEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 131          
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A7S1U9V4_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9V4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.060e-18
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0
Query:    2 EEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 41
            EEM+ DGPAGKEWGGP RGG L EPTRFGDWERKGRC+DF
Sbjct:  100 EEMILDGPAGKEWGGPRRGGKLAEPTRFGDWERKGRCTDF 139          
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A485L7V1_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7V1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.270e-17
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    1 MEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 41
            MEEM+  GPAG EWGGP RGG  +EPTRFGDWE+KGRC DF
Sbjct:   52 MEEMVVIGPAGTEWGGPQRGGKFKEPTRFGDWEKKGRCCDF 92          
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A6A3LCQ3_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LCQ3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.540e-16
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0
Query:    1 MEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 41
            +E+M+  GP+G E+GGPTRGG L+EPTRFGDWERKGRCSDF
Sbjct:   76 VEDMVAIGPSGAEYGGPTRGGKLKEPTRFGDWERKGRCSDF 116          
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A024U2R8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2R8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.760e-16
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    1 MEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 41
            ME+M+  GPAG EWGGP RGG  +EPTRFGDWE+KGRC DF
Sbjct:   54 MEDMVMIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 94          
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A2P4YG81_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YG81_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.430e-16
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query:    2 EEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 41
            E+M+  GP+G E+GGPTRGG L+EPTRFGDWERKGRCSDF
Sbjct:   54 EDMVAIGPSGVEYGGPTRGGKLKEPTRFGDWERKGRCSDF 93          
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A225W1X5_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W1X5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.630e-16
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query:    2 EEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 41
            E+M+  GP+G E+GGPTRGG L+EPTRFGDWERKGRCSDF
Sbjct:   57 EDMVAIGPSGVEYGGPTRGGKLKEPTRFGDWERKGRCSDF 96          
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A6G0WXB9_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXB9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.630e-16
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    1 MEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 41
            ME+M+  GPAG EWGGP RGG  +EPTRFGDWE+KGRC DF
Sbjct:   55 MEDMVVIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 95          
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A1V9YW31_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YW31_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.190e-16
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    1 MEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 41
            ME+M+  GPAG EWGGP+RGG  +EPTR+GDWE+KGRC DF
Sbjct:   47 MEDMVTIGPAGVEWGGPSRGGKYKEPTRYGDWEKKGRCMDF 87          
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: W4GYH8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYH8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.530e-16
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    1 MEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 41
            ME+M+  GPAG EWGGP RGG  +EPTRFGDWE+KGRC DF
Sbjct:   50 MEDMVVIGPAGVEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 90          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM82_ECTSI1.370e-2295.12Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S1U9V4_9STRA1.060e-1885.00Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A485L7V1_9STRA8.270e-1775.61Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A6A3LCQ3_9STRA1.540e-1675.61Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A024U2R8_9STRA1.760e-1673.17Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A2P4YG81_9STRA2.430e-1677.50Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A225W1X5_9STRA2.630e-1677.50Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A6G0WXB9_9STRA3.630e-1673.17Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A1V9YW31_9STRA4.190e-1670.73Succinate dehydrogenase assembly factor 4, mitocho... [more]
W4GYH8_9STRA4.530e-1673.17Succinate dehydrogenase assembly factor 4, mitocho... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012875Succinate dehydrogenase assembly factor 4PFAMPF07896DUF1674coord: 11..41
e-value: 8.9E-9
score: 35.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68758contigH-elongata_contig68758:3006..3131 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68758.14511.1mRNA_H-elongata_contig68758.14511.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig68758 2991..3131 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig68758.14511.1 ID=prot_H-elongata_contig68758.14511.1|Name=mRNA_H-elongata_contig68758.14511.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012875SDHF4