prot_H-elongata_contig68449.14478.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig68449.14478.1
Unique Nameprot_H-elongata_contig68449.14478.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length289
Homology
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BLAST of mRNA_H-elongata_contig68449.14478.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.390e-15
Identity = 101/324 (31.17%), Postives = 142/324 (43.83%), Query Frame = 0 
Query:    5 RASTFDS---SQRPPSPQE---IHLKPVALSDLQATVESLREWRKTLDMQSTA--SVSGGGGGDESRGSAVSLQQQSRSYAQRGRATP------KLTVPIENGAXXXXXXXXXXXXXXXXXXXXXXXYKVAQ--------------GNFDSNGTAAAAEGEEDEKQGKLNGQESPPSS--------DVGATWVNPVLVAFKRQQREAKALHAELEEKERARAVAMVEAXXXXXXXXXXXXXETEGVSGSEACGGKEEAGE----TIVQPGMDDAPDLAMAATSFDIRLATDEVSKPSLRRIDAVNIFHDLAEKSWASEPLSSSA 288
            RA TF        P SP +     LK V LS+ QA  ESLR WR++ D+++ +    SG G  +E R  AVSLQ+QSRS+A+ GRAT       K T  +  G                           A               G+    G      GE+  +   L+ QE   SS           A+  NPV+ AF+R+++EA A  AE+              XXXXX           G  G+ A    E+ GE    ++V+ G++DAP  A AA++  +R+A + +S  SLR  D+V    ++ E+SW   PLSSSA
Sbjct:  462 RALTFGEVGGGHSPSSPADSGGARLKEVPLSEAQAMAESLRAWRQSFDVRNASFGGESGDGDAEEDRDRAVSLQEQSRSFARIGRATALFTSQTKWTTDVVGGGEGSSSVEATGLGLDPGGRSGGEEGSGAMXXXXXXXXXXXXXXGSRVDRGQRQDGVGEKTHRT--LSDQEWSSSSRRTVEMAASEAASLTNPVMAAFERKRKEAAARQAEVXXXXXXXXXXXXXXXXXXXKAGNGEVAPAAGAEGAPAAA--EDDGELHMGSVVRLGLNDAPGSASAASAAGLRIAAEGISNLSLRSRDSVENLQEMGEQSWGPLPLSSSA 781
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68449.14478.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2B2_9PHAE4.390e-1531.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 165..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68449contigH-elongata_contig68449:2318..3184 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68449.14478.1mRNA_H-elongata_contig68449.14478.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig68449 2281..3189 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig68449.14478.1 ID=prot_H-elongata_contig68449.14478.1|Name=mRNA_H-elongata_contig68449.14478.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp
MMPLRASTFDSSQRPPSPQEIHLKPVALSDLQATVESLREWRKTLDMQST
ASVSGGGGGDESRGSAVSLQQQSRSYAQRGRATPKLTVPIENGATPKLTV
PVESGATLKLAVPMENGYKVAQGNFDSNGTAAAAEGEEDEKQGKLNGQES
PPSSDVGATWVNPVLVAFKRQQREAKALHAELEEKERARAVAMVEAAKAE
AAKAAAETEETEGVSGSEACGGKEEAGETIVQPGMDDAPDLAMAATSFDI
RLATDEVSKPSLRRIDAVNIFHDLAEKSWASEPLSSSA*
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