prot_H-elongata_contig68334.14461.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig68334.14461.1
Unique Nameprot_H-elongata_contig68334.14461.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length137
Homology
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BLAST of mRNA_H-elongata_contig68334.14461.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.000e-7
Identity = 48/125 (38.40%), Postives = 60/125 (48.00%), Query Frame = 0 
Query:    1 MRSLSARRALAFLLLQAHAAAFSSPPPFSGNRRPRGPPFPPTASSKTXXXXSKRKPPPLALGRRIPSPLGRVPPFPFSNYRSSSSRESRPPRQDLPLTILQGWFDGWGPGDGRTRGNEGKGERIG 125
            M++  ARRAL  LLLQA  AAFS   P  G RRPR    P  A+       S   PPP A  R  P     +         +S  R+    +  +PLT+LQGWFDG G GD     ++G G+  G
Sbjct:    1 MKASCARRALVLLLLQARVAAFSGRSP--GQRRPRVQVRPSAAAVVAASRASH--PPPSAFRRARPGQARSILGGGRCGGGNSGLRDGNSRQVHIPLTVLQGWFDGLGAGDSSGATDKGGGKSGG 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68334.14461.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L981_9PHAE5.000e-738.40PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..137
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.705

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68334contigH-elongata_contig68334:1502..3165 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68334.14461.1mRNA_H-elongata_contig68334.14461.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig68334 1225..3165 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig68334.14461.1 ID=prot_H-elongata_contig68334.14461.1|Name=mRNA_H-elongata_contig68334.14461.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MRSLSARRALAFLLLQAHAAAFSSPPPFSGNRRPRGPPFPPTASSKTPPF
PSKRKPPPLALGRRIPSPLGRVPPFPFSNYRSSSSRESRPPRQDLPLTIL
QGWFDGWGPGDGRTRGNEGKGERIGDKRGKSSSKKDD
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