prot_H-elongata_contig68318.14458.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig68318.14458.1
Unique Name	prot_H-elongata_contig68318.14458.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	116

Homology

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BLAST of mRNA_H-elongata_contig68318.14458.1 vs. uniprot
Match: A0A6H5K0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H2_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 7.100e-35
Identity = 72/97 (74.23%), Postives = 86/97 (88.66%), Query Frame = 0

Query:    1 VAITCFFRNSATFAYPARVAAFTAVVIFTGSNSVLGADGEVVSLARIVNTVMGSLIYLFVDILLVPTRAKVLLYEQTYLSLDAALKEVTINDERLFG 97
            VA+TCFFRNS+ F+Y A VAAFTAVVIFT S++VLGA+GE VSLARIVNTV+GS++YL VD+LLVPTRAK LL EQ YLSLDAA +E++IN ER+FG
Sbjct:   50 VAVTCFFRNSSQFSYAALVAAFTAVVIFTSSSTVLGANGEAVSLARIVNTVVGSVVYLLVDMLLVPTRAKNLLLEQIYLSLDAAFRELSINGERMFG 146

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BLAST of mRNA_H-elongata_contig68318.14458.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.940e-29
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 0

Query:    1 VAITCFFRNSATFAYPARVAAFTAVVIFTGSNSVLGADGEVVSLARIVNTVMGSLIYLFVDILLVPTRAKVLLYEQTYLSLDAALKE 87
            VA+TCFFRNS+ F+Y A VAAFTAVVIFT SN+VLGA+GE VSLARIVNTV+GS++YL VD+LL PTRAK L+ EQ YLSLDAA +E
Sbjct:  812 VAVTCFFRNSSQFSYAALVAAFTAVVIFTSSNTVLGANGEAVSLARIVNTVVGSVVYLLVDMLLAPTRAKNLVLEQIYLSLDAAFRE 898

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BLAST of mRNA_H-elongata_contig68318.14458.1 vs. uniprot
Match: A0A836CQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ15_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.740e-5
Identity = 42/108 (38.89%), Postives = 56/108 (51.85%), Query Frame = 0

Query:    1 VAITCFFRNSATFAYPARVAAFTAVVIFTGSNSVLGADGEVVSLARIVNTVMGSLIYLF-----------VDILLVPTRAKVLLYEQTYLSLDAALKEVTINDERLFG 97
            VA   FF+NS +  Y A V+AFTAV+I  G+ +   A G V  L RI NT++G +IY+            VD L+ P RAKVLL  +   +L      V   D +L G
Sbjct:  751 VAFCAFFKNSKSHGYAAIVSAFTAVIIVLGTFNA-SAVGSVAPLTRIQNTILGLVIYMAXXXXXXXXXXAVDNLVFPVRAKVLLRGELAEALGLMRDAVNCLDAQLLG 857

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig68318.14458.1 vs. uniprot

BLAST of mRNA_H-elongata_contig68318.14458.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5K0H2_9PHAE	7.100e-35	74.23	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LD61_ECTSI	1.940e-29	74.71	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A836CQ15_9STRA	2.740e-5	38.89	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 32..42
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 66..116
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..31
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 43..65
None	No IPR available	TMHMM	TMhelix		coord: 45..67
None	No IPR available	TMHMM	TMhelix		coord: 13..35

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig68318	contig	H-elongata_contig68318:86..1884 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig68318.14458.1	mRNA_H-elongata_contig68318.14458.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig68318 86..1884 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig68318.14458.1 ID=prot_H-elongata_contig68318.14458.1|Name=mRNA_H-elongata_contig68318.14458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
VAITCFFRNSATFAYPARVAAFTAVVIFTGSNSVLGADGEVVSLARIVNT
VMGSLIYLFVDILLVPTRAKVLLYEQTYLSLDAALKEVTINDERLFGVRA
SSRECPRQLAKRLRLS