prot_H-elongata_contig67998.14422.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig67998.14422.1
Unique Nameprot_H-elongata_contig67998.14422.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length94
Homology
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BLAST of mRNA_H-elongata_contig67998.14422.1 vs. uniprot
Match: D7G0C7_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C7_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.290e-18
Identity = 48/95 (50.53%), Postives = 54/95 (56.84%), Query Frame = 0 
Query:    1 GFPDLVLWRPKGRTGNGVRRRASGRCEAAE----------FGLSWEADGQGWEVEVVEVKSVKDTLSYTQRAWLTLLRNAGVPAKVVRVFAEGDS 85
            GFPD+VLWRPK   G    R   G     E          FGL WE  GQGWEV+VVEVKS  D  S+ Q+AWL  L NA VPA V RV AE ++
Sbjct:  819 GFPDVVLWRPKSDKGVAESRSGGGSGTGEEEGLDWSAKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRVLAEKEA 913
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67998.14422.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0C7_ECTSI1.290e-1850.53Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014883VRR-NUC domainPFAMPF08774VRR_NUCcoord: 1..80
e-value: 5.9E-13
score: 48.8
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 1..86
e-value: 7.0E-6
score: 28.0
IPR033315Fanconi-associated nuclease 1-likePANTHERPTHR15749FAMILY NOT NAMEDcoord: 1..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67998contigH-elongata_contig67998:2539..2820 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67998.14422.1mRNA_H-elongata_contig67998.14422.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig67998 2539..2820 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig67998.14422.1 ID=prot_H-elongata_contig67998.14422.1|Name=mRNA_H-elongata_contig67998.14422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
GFPDLVLWRPKGRTGNGVRRRASGRCEAAEFGLSWEADGQGWEVEVVEVK
SVKDTLSYTQRAWLTLLRNAGVPAKVVRVFAEGDSCDGGKKSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014883VRR_NUC
IPR011856tRNA_endonuc-like_dom_sf
IPR033315Fan1-like