prot_H-elongata_contig6798.14416.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6798.14416.1
Unique Nameprot_H-elongata_contig6798.14416.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length62
Homology
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A2N9F271_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F271_FAGSY)

HSP 1 Score: 72.4 bits (176), Expect = 2.270e-13
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0
Query:    2 KLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 62
            KL+ +LYGL Q+P AWF    S LL IGFVA+ ADP +++LR+G  VF L LY DD+++TG
Sbjct:  400 KLQKSLYGLKQAPRAWFERFTSHLLTIGFVASTADPSLFVLRTGSTVFYLLLYVDDIILTG 460          
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A2N9FIJ5_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FIJ5_FAGSY)

HSP 1 Score: 70.1 bits (170), Expect = 1.490e-12
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 0
Query:    2 KLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 62
            KL+ +LYGL Q+P AWF    S LL IGFVA+ ADP +++LR+G  V  L LY DD+++TG
Sbjct:  685 KLQKSLYGLKQAPRAWFERFTSHLLTIGFVASTADPSLFVLRTGSTVLYLLLYVDDIILTG 745          
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A2N9F3A0_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F3A0_FAGSY)

HSP 1 Score: 67.8 bits (164), Expect = 9.720e-12
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 0
Query:    2 KLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 62
            KL+ +LYGL Q+P AWF    S LL IGFVA+ ADP +++LR+G  V  L LY DD+++T 
Sbjct:  703 KLQKSLYGLKQAPRAWFERFTSHLLTIGFVASTADPSLFVLRTGSTVLYLLLYVDDIILTS 763          
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: UPI00142E428A (uncharacterized protein LOC108871170 n=2 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E428A)

HSP 1 Score: 66.6 bits (161), Expect = 2.490e-11
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 0
Query:    1 MKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 62
            ++L  ALYGL Q+P AW+G IDS  L  GF  +  D  +Y+++ G DV I++LY DD+++TG
Sbjct:  988 LRLHKALYGLKQAPRAWYGRIDSYFLQNGFERSMNDAALYIMKQGGDVLIVSLYVDDIIITG 1049          
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A2N9EGA9_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EGA9_FAGSY)

HSP 1 Score: 65.9 bits (159), Expect = 4.570e-11
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0
Query:    3 LKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 62
            L  ++YGL Q+P AWF +  S LL IGF+A+ ADP ++L + G  V  L LY DD+++TG
Sbjct:  160 LHKSIYGLRQAPRAWFEKFSSHLLTIGFIASQADPSLFLYKHGSTVLFLLLYVDDIIITG 219          
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.600e-11
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    2 KLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 62
            KL+ +LYGL+QSPA W   +D SL   G+  T +DP +Y+  SG  + ILT+Y DD+L+TG
Sbjct:    4 KLERSLYGLSQSPALWSDTLDKSLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITG 64          
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A2N9FD48_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FD48_FAGSY)

HSP 1 Score: 65.9 bits (159), Expect = 4.640e-11
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0
Query:    3 LKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 62
            L  ++YGL Q+P AWF +  S LL IGF+A+ ADP ++L + G  V  L LY DD+++TG
Sbjct:  810 LHKSIYGLRQAPRAWFEKFSSHLLTIGFIASQADPSLFLYKHGSTVLFLLLYVDDIIITG 869          
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A6A2WYU2_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WYU2_HIBSY)

HSP 1 Score: 65.5 bits (158), Expect = 6.330e-11
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    3 LKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 62
            LK ALYGL Q+P AW+  ID  LL +GF  + ++P +Y+  S +D+ I+ +Y DDVLVTG
Sbjct:  637 LKKALYGLKQAPRAWYARIDEHLLSLGFEKSPSEPTLYVKHSTVDILIVFVYVDDVLVTG 696          
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: D1GEF6_BRARP (Disease resistance protein n=1 Tax=Brassica rapa subsp. pekinensis TaxID=51351 RepID=D1GEF6_BRARP)

HSP 1 Score: 65.5 bits (158), Expect = 6.380e-11
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:    3 LKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 62
            L  +LYGL QSP AWF +  + L++ GFV +  DP +++ R G D+ +L LY DD+L+TG
Sbjct: 1035 LHKSLYGLKQSPRAWFDKFSTYLIEFGFVCSIKDPSLFIYRRGKDIIMLLLYVDDMLITG 1094          
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A5A7UEV5_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UEV5_CUCME)

HSP 1 Score: 65.1 bits (157), Expect = 8.070e-11
Identity = 28/60 (46.67%), Postives = 44/60 (73.33%), Query Frame = 0
Query:    3 LKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 62
            LK ALYGL Q+P AW+ +ID  LL +GF+ + ++  +Y+  +G ++ I++LY DD+LVTG
Sbjct:   56 LKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVDDLLVTG 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9F271_FAGSY2.270e-1355.74Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9FIJ5_FAGSY1.490e-1254.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9F3A0_FAGSY9.720e-1252.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00142E428A2.490e-1146.77uncharacterized protein LOC108871170 n=2 Tax=Brass... [more]
A0A2N9EGA9_FAGSY4.570e-1148.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KRT7_9PHAE4.600e-1149.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9FD48_FAGSY4.640e-1148.33Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6A2WYU2_HIBSY6.330e-1150.00Integrase catalytic domain-containing protein n=2 ... [more]
D1GEF6_BRARP6.380e-1146.67Disease resistance protein n=1 Tax=Brassica rapa s... [more]
A0A5A7UEV5_CUCME8.070e-1146.67Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..62
e-value: 4.9E-10
score: 39.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6798contigH-elongata_contig6798:415..600 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6798.14416.1mRNA_H-elongata_contig6798.14416.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6798 412..600 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6798.14416.1 ID=prot_H-elongata_contig6798.14416.1|Name=mRNA_H-elongata_contig6798.14416.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFI
LTLYFDDVLVTG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2