prot_H-elongata_contig67566.14366.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig67566.14366.1
Unique Name	prot_H-elongata_contig67566.14366.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	94

Homology

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BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 7.990e-54
Identity = 89/93 (95.70%), Postives = 93/93 (100.00%), Query Frame = 0

Query:    1 VCYACVRAEEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVFTELAVLYSKYSPEKLMDHIKIYWSRCNVTKV 93
            VCYACVRA+EFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVF+ELAVLYSKYSPEKLM+HIKI+WSRCNVTKV
Sbjct: 1242 VCYACVRADEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVFSELAVLYSKYSPEKLMEHIKIFWSRCNVTKV 1334

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BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.850e-46
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0

Query:    1 VCYACVRAEEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVFTELAVLYSKYSPEKLMDHIKIYWSRCNVTKV 93
            VCYACVRA EFRLAG+CGL ILKHPDH+EEL  HYERAGHPTEL+QLMEQGLGLEEAHSG+FTELAVLYSKYSP+KLM HIK++W+R N +KV
Sbjct: 1284 VCYACVRAGEFRLAGICGLQILKHPDHLEELTLHYERAGHPTELLQLMEQGLGLEEAHSGIFTELAVLYSKYSPDKLMAHIKLFWNRMNTSKV 1376

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BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot
Match: A0A482RYD4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYD4_9ARCH)

HSP 1 Score: 152 bits (384), Expect = 2.760e-41
Identity = 69/90 (76.67%), Postives = 80/90 (88.89%), Query Frame = 0

Query:    4 ACVRAEEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVFTELAVLYSKYSPEKLMDHIKIYWSRCNVTKV 93
            AC+RAEEFRLA +CGLHI+ HPDH+EELI HYERAG   EL+QLMEQGLGL+ AHSG+FTEL +LYSKY PEKLM+HIKI+WSR NVTK+
Sbjct:  259 ACLRAEEFRLANICGLHIIVHPDHLEELISHYERAGRSAELMQLMEQGLGLDHAHSGIFTELGILYSKYLPEKLMEHIKIFWSRMNVTKL 348

[Close]

BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot
Match: A0A4D9DAY4_9STRA (Clathrin heavy chain n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAY4_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.370e-38
Identity = 66/90 (73.33%), Postives = 79/90 (87.78%), Query Frame = 0

Query:    4 ACVRAEEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVFTELAVLYSKYSPEKLMDHIKIYWSRCNVTKV 93
            ACV+  EFRLA +CGLHI+ HPDH+EELIQHYERAGHP EL+QL+EQGLGLE AHSG+FTEL +LYSKY PEKLM+H+KI+ +R NV K+
Sbjct: 1280 ACVKVGEFRLAAICGLHIIVHPDHLEELIQHYERAGHPKELMQLLEQGLGLEGAHSGIFTELGILYSKYLPEKLMEHLKIFHNRMNVPKM 1369

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BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot
Match: A0A2P4XMC0_9STRA (Clathrin heavy chain n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMC0_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.420e-38
Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 0

Query:    3 YACVRAEEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVFTELAVLYSKYSPEKLMDHIKIYWSRCNVTKV 93
            YACV   EFRLAG+CGLHI+ HPDH+EELI HYE+ GH TEL++LMEQGLGLE AH+G+FTELA+LYSKY P KLM+HIKI+ SR NV+K+
Sbjct:  530 YACVDVNEFRLAGLCGLHIIVHPDHLEELILHYEKRGHSTELLKLMEQGLGLEGAHAGIFTELAILYSKYLPSKLMEHIKIFHSRMNVSKI 620

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BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot
Match: A0A225V906_9STRA (Clathrin heavy chain (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V906_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.450e-38
Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 0

Query:    3 YACVRAEEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVFTELAVLYSKYSPEKLMDHIKIYWSRCNVTKV 93
            YACV   EFRLAG+CGLHI+ HPDH+EELI HYE+ GH TEL++LMEQGLGLE AH+G+FTELA+LYSKY P KLM+HIKI+ SR NV+K+
Sbjct:  866 YACVDVNEFRLAGLCGLHIIVHPDHLEELILHYEKRGHSTELLKLMEQGLGLEGAHAGIFTELAILYSKYLPSKLMEHIKIFHSRMNVSKI 956

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BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot
Match: K3WLC2_GLOUD (Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 RepID=K3WLC2_GLOUD)

HSP 1 Score: 144 bits (362), Expect = 6.480e-38
Identity = 66/91 (72.53%), Postives = 79/91 (86.81%), Query Frame = 0

Query:    3 YACVRAEEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVFTELAVLYSKYSPEKLMDHIKIYWSRCNVTKV 93
            YACV   EFRLAG+CGLHI+ HPDH+EELI HYER GH TEL++LMEQGLGLE AH+G+FTELA+LYSKY P KLM+H+KI+ +R NV+KV
Sbjct: 1273 YACVDVGEFRLAGLCGLHIMVHPDHLEELILHYERRGHSTELLKLMEQGLGLEGAHAGIFTELAILYSKYLPSKLMEHVKIFHTRMNVSKV 1363

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BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot
Match: A0A7S3H689_9STRA (Clathrin heavy chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H689_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.240e-37
Identity = 65/90 (72.22%), Postives = 78/90 (86.67%), Query Frame = 0

Query:    4 ACVRAEEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVFTELAVLYSKYSPEKLMDHIKIYWSRCNVTKV 93
            AC+RA+EFRLA +CGLHI+ HPDH+EELI HYERAG   EL+QLMEQGLGL+ AH+G+FTEL VLYSKY PEKLM+H+KI+ SR NV K+
Sbjct: 1289 ACLRAQEFRLANICGLHIIVHPDHLEELIGHYERAGRSAELMQLMEQGLGLDNAHAGIFTELGVLYSKYLPEKLMEHVKIFHSRMNVVKL 1378

[Close]

BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot
Match: A0A2D4BEN2_PYTIN (Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BEN2_PYTIN)

HSP 1 Score: 142 bits (358), Expect = 2.250e-37
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 0

Query:    1 VCYACVRAEEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVFTELAVLYSKYSPEKLMDHIKIYWSRCNVTKV 93
            VCYACV   E+RLAG+CGLHI+ HPDH+EELI  YE+ GH  EL++LMEQGLGLE AH+G+FTELA+LYSKY P KLM+HIKI+ +R NV+KV
Sbjct: 1674 VCYACVDVNEYRLAGLCGLHIIVHPDHLEELIXQYEKRGHSAELLKLMEQGLGLEGAHTGIFTELAILYSKYLPTKLMEHIKIFHTRMNVSKV 1766

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BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot
Match: A0A5D6XWJ0_9STRA (Clathrin-link domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWJ0_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.090e-37
Identity = 66/91 (72.53%), Postives = 78/91 (85.71%), Query Frame = 0

Query:    3 YACVRAEEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQGLGLEEAHSGVFTELAVLYSKYSPEKLMDHIKIYWSRCNVTKV 93
            YACV   EFRLAG+CGLHI+ HPDH+EELI HYER GH  EL++LMEQGLGLE AH+G+FTELA+LYSKY P KLM+HIKI+ +R NV+KV
Sbjct: 1273 YACVDVGEFRLAGLCGLHIMVHPDHLEELILHYERRGHSAELLKLMEQGLGLEGAHAGIFTELAILYSKYLPTKLMEHIKIFHTRMNVSKV 1363

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot

BLAST of mRNA_H-elongata_contig67566.14366.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWD1_ECTSI	7.990e-54	95.70	Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879...	[more]
A0A835YZH1_9STRA	3.850e-46	82.80	Clathrin heavy chain n=1 Tax=Tribonema minus TaxID...	[more]
A0A482RYD4_9ARCH	2.760e-41	76.67	Uncharacterized protein n=1 Tax=archaeon TaxID=190...	[more]
A0A4D9DAY4_9STRA	1.370e-38	73.33	Clathrin heavy chain n=2 Tax=Monodopsidaceae TaxID...	[more]
A0A2P4XMC0_9STRA	3.420e-38	72.53	Clathrin heavy chain n=1 Tax=Phytophthora palmivor...	[more]
A0A225V906_9STRA	3.450e-38	72.53	Clathrin heavy chain (Fragment) n=1 Tax=Phytophtho...	[more]
K3WLC2_GLOUD	6.480e-38	72.53	Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 ...	[more]
A0A7S3H689_9STRA	2.240e-37	72.22	Clathrin heavy chain n=1 Tax=Spumella elongata Tax...	[more]
A0A2D4BEN2_PYTIN	2.250e-37	69.89	Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 Re...	[more]
A0A5D6XWJ0_9STRA	3.090e-37	72.53	Clathrin-link domain-containing protein n=1 Tax=Py...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 1..93 e-value: 7.6E-33 score: 115.7
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PFAM	PF00637	Clathrin	coord: 21..92 e-value: 2.2E-15 score: 56.8
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat	PROSITE	PS50236	CHCR	coord: 19..93 score: 20.588
None	No IPR available	PANTHER	PTHR10292:SF1	CLATHRIN HEAVY CHAIN	coord: 1..93
None	No IPR available	PANTHER	PTHR10292	CLATHRIN HEAVY CHAIN RELATED	coord: 1..93
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 1..93

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig67566	contig	H-elongata_contig67566:2534..3212 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig67566.14366.1	mRNA_H-elongata_contig67566.14366.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig67566 2534..3212 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig67566.14366.1 ID=prot_H-elongata_contig67566.14366.1|Name=mRNA_H-elongata_contig67566.14366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
VCYACVRAEEFRLAGVCGLHILKHPDHVEELIQHYERAGHPTELIQLMEQ
GLGLEEAHSGVFTELAVLYSKYSPEKLMDHIKIYWSRCNVTKV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR000547	Clathrin_H-chain/VPS_repeat
IPR016024	ARM-type_fold