prot_H-elongata_contig6748.14358.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6748.14358.1
Unique Nameprot_H-elongata_contig6748.14358.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length439
Homology
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BLAST of mRNA_H-elongata_contig6748.14358.1 vs. uniprot
Match: D8LRQ1_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ1_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.050e-30
Identity = 320/437 (73.23%), Postives = 350/437 (80.09%), Query Frame = 0 
Query:    2 PTANEHRSMLHMLSQSKEVERGANWKRSVEILREAQALDLRLTEVSFNTVIADLGFAEQVDLAFEIHDEMHKAGIPSSINSYNRLLGVCEKNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDVRTALRLLEEMEKKEMAIDVVTYTTAICACGPDWLLALDVIEDMAADGVPPNLQSYTATMCCCLAAEEYREAIAMFNRMKEAGIAPDLRAYKLAIIAHEKDGNLGGRRAMEAEIANSNLKQNVPDWDARW 438
            PTA E+RSMLH+LS S++ ERGANW+RS+E+LREAQ  +L ++E SF TV+ DLGFA +VDLAF I+D+M  AGIP S+++YNRLLGVCEKN      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  +IDVV+YT+AICACGPDWLLA                             EE RE I +FNRMK AG+APDLRAY LAI+AH+ D N  GR ++EAE+  + L     +W+  W
Sbjct:  641 PTAGEYRSMLHILSHSRDAERGANWERSMELLREAQENELPISESSFQTVMTDLGFAGEVDLAFSIYDDMRMAGIPPSLDTYNRLLGVCEKN---KEWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIDVVSYTSAICACGPDWLLAXXXXXXXXXXXXXXXXXXXXXXXXXXFKGEEPREVINVFNRMKAAGVAPDLRAYNLAIMAHDADENHYGRASLEAELTEAGLSLQDKEWETAW 1074
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BLAST of mRNA_H-elongata_contig6748.14358.1 vs. uniprot
Match: A0A7S3PIA8_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PIA8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.680e-5
Identity = 30/88 (34.09%), Postives = 47/88 (53.41%), Query Frame = 0 
Query:  327 DVVTYTTAICAC-GPD---WLLALDVIEDMAADGVPPNLQSYTATMCCCLAAEEYREAIAMFNRMKEAGIAPDLRAYKLAIIAHEKDG 410
            D V Y  AI  C G +   W +A +++ DM ADG+ P++QSY   +  C  A +YR+ + M + M+   +  +   YKL     EK+G
Sbjct:  295 DPVIYHNAILTCFGKEKVVWKVAWELLHDMIADGIIPDIQSYNLVLKACKLANQYRQGMEMLHYMEGISVKFNTETYKLGASLAEKNG 382
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6748.14358.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRQ1_ECTSI3.050e-3073.23Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A7S3PIA8_9STRA4.680e-534.09Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 341..436
e-value: 5.8E-13
score: 51.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 126..233
e-value: 3.2E-27
score: 97.0
coord: 3..125
e-value: 9.9E-22
score: 79.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 234..340
e-value: 1.9E-19
score: 72.2
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 346..429
e-value: 6.1E-8
score: 32.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 363..395
e-value: 3.6E-6
score: 24.8
coord: 116..149
e-value: 5.3E-4
score: 18.0
coord: 186..220
e-value: 3.1E-6
score: 25.0
coord: 82..114
e-value: 6.3E-6
score: 24.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 184..230
e-value: 9.7E-10
score: 38.5
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 67..127
e-value: 3.6E-11
score: 43.0
coord: 245..302
e-value: 2.3E-5
score: 24.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 360..394
score: 10.216
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 149..183
score: 7.914
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 257..291
score: 8.254
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..113
score: 11.213
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 184..218
score: 11.509
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 219..256
score: 6.796
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 114..148
score: 8.857
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 292..326
score: 7.662
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..78
score: 8.868
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 341..428
coord: 28..229
coord: 239..337

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6748contigH-elongata_contig6748:768..8871 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6748.14358.1mRNA_H-elongata_contig6748.14358.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6748 753..8871 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6748.14358.1 ID=prot_H-elongata_contig6748.14358.1|Name=mRNA_H-elongata_contig6748.14358.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=439bp
MPTANEHRSMLHMLSQSKEVERGANWKRSVEILREAQALDLRLTEVSFNT
VIADLGFAEQVDLAFEIHDEMHKAGIPSSINSYNRLLGVCEKNGQVDRAF
EILDEMYKSNFPPTVVSFGSAISACGKGYEWRKALALLVRMQHDNVPPNL
HCMNAAINALGLSGEWQRAEQIMEVVRQWGLVSNVVTYNSLAMAYVSAGE
SDRALGVLDTMRENNLQPDEITFGTLLMACDGGERGDAYHSIRELMDEMD
SLGIEKTVIHYCAAIESANRVKETDTSWEMWRQMKLNGVQPNNHAYSSAI
NTAAIDRDVRTALRLLEEMEKKEMAIDVVTYTTAICACGPDWLLALDVIE
DMAADGVPPNLQSYTATMCCCLAAEEYREAIAMFNRMKEAGIAPDLRAYK
LAIIAHEKDGNLGGRRAMEAEIANSNLKQNVPDWDARW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat