prot_H-elongata_contig67395.14344.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig67395.14344.1
Unique Name	prot_H-elongata_contig67395.14344.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	167

Homology

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BLAST of mRNA_H-elongata_contig67395.14344.1 vs. uniprot
Match: D7FJF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF0_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.480e-35
Identity = 77/170 (45.29%), Postives = 105/170 (61.76%), Query Frame = 0

Query:    3 ECCCDMV-EMWIMLLSFADALTDFLYFDKLYRGDEVSEGVAFIVLPFAIFGLVGMLVGPTTQIGLTTAVLLEDVPQIIATTAIEAYLVGGNISRWTAPAIASYVFSVISLQQKFFKIGFAPPI-----PLTQANDEQKPNPV--WVFFCSLLAVIA-SLLVAWAIAAIVI 163
            ECC +   E WI+ LS AD L+DFLYF++LY  + V +GVAF VL FAI GL+  L GP + IG   ++  ED P II TTAI+AYL G ++  W A AI SYVFS+ ++QQK  K+G    I     P  +   + +  P   WV F   LA +A ++L+AWA++A +I
Sbjct:    7 ECCVNCCNETWILALSVADILSDFLYFEELYTENNVPDGVAFAVLGFAIVGLMSFLSGPFSDIGTAVSISFEDFPIIIITTAIQAYLAGADVREWHAVAIVSYVFSMFAMQQKVMKLGLVKSIRDILNPRAEEERQAEIGPCYWWVVFVRSLAAVAFTVLLAWALSAFII 176

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig67395.14344.1 vs. uniprot

BLAST of mRNA_H-elongata_contig67395.14344.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FJF0_ECTSI	1.480e-35	45.29	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..58
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 29..39
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 138..165
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..28
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 59..137
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 166..166
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 40..62
None	No IPR available	TMHMM	TMhelix		coord: 138..160

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig67395	contig	H-elongata_contig67395:1286..1786 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig67395.14344.1	mRNA_H-elongata_contig67395.14344.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig67395 1207..3329 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig67395.14344.1 ID=prot_H-elongata_contig67395.14344.1|Name=mRNA_H-elongata_contig67395.14344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
MVECCCDMVEMWIMLLSFADALTDFLYFDKLYRGDEVSEGVAFIVLPFAI
FGLVGMLVGPTTQIGLTTAVLLEDVPQIIATTAIEAYLVGGNISRWTAPA
IASYVFSVISLQQKFFKIGFAPPIPLTQANDEQKPNPVWVFFCSLLAVIA
SLLVAWAIAAIVIAAT*