prot_H-elongata_contig67338.14342.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig67338.14342.1
Unique Nameprot_H-elongata_contig67338.14342.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length195
Homology
BLAST of mRNA_H-elongata_contig67338.14342.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 2.010e-76
Identity = 118/194 (60.82%), Postives = 144/194 (74.23%), Query Frame = 0
Query:    1 MYLAQVSRYNIILAVNQLARAMSKPLKANTGAARHLLIYFAGVVNFSIIYKQGGFKLVAYSDANWGNNSDNGKSTPSCFVMLAYGPVSFKVGLQSLTAQSTMEAELVAASLIMKEAVFCSNMMVELYFEKGFNSVPLYLDNTLTLHFAGNLTYSPRAKHIALRYFFVQELMEEGMMIIHYVNTQDQLADLGTKH 194
            MY+AQV RY+I+ A   LAR M+KP K +T  A+  L Y AG ++FSI YK+GGFKL  +SD+NW NN DNGKST S   MLA  P+SF+ GLQ LTA STMEAELVA++L MKEAVFCSNMM EL F K F  +P+Y DNT TLH  GN ++S R KHIALR+FF++EL+ EG + IHY  T+D LA +GTKH
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKH 194          
BLAST of mRNA_H-elongata_contig67338.14342.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 4.580e-76
Identity = 121/194 (62.37%), Postives = 147/194 (75.77%), Query Frame = 0
Query:    1 MYLAQVSRYNIILAVNQLARAMSKPLKANTGAARHLLIYFAGVVNFSIIYKQGGFKLVAYSDANWGNNSDNGKSTPSCFVMLAYGPVSFKVGLQSLTAQSTMEAELVAASLIMKEAVFCSNMMVELYFEKGFNSVPLYLDNTLTLHFAGNLTYSPRAKHIALRYFFVQELMEEGMMIIHYVNTQDQLADLGTKH 194
            MY+AQV RY+I+ A  QLAR M+KP K +  AA+H L Y AG ++FSI YK+GGFKL  +SD+NW NN DNGKST S   MLA  P+SF+ GLQ LTA STMEAELVA++L MKEAVFCSNMM EL F K F  +P+Y DNT TLH  GN ++S R KHIALR+FF++EL+ EG + IHY  T+D LAD+GTKH
Sbjct:  226 MYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKH 419          
BLAST of mRNA_H-elongata_contig67338.14342.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 9.700e-74
Identity = 121/194 (62.37%), Postives = 148/194 (76.29%), Query Frame = 0
Query:    1 MYLAQVSRYNIILAVNQLARAMSKPLKANTGAARHLLIYFAGVVNFSIIYKQGGFKLVAYSDANWGNNSDNGKSTPSCFVMLAYGPVSFKVGLQSLTAQSTMEAELVAASLIMKEAVFCSNMMVELYFEKGFNSVPLYLDNTLTLHFAGNLTYSPRAKHIALRYFFVQELMEEGMMIIHYVNTQDQLADLGTKH 194
            MY+AQV RY+I+ A  QLAR+M+KP K +  AA+H L Y AG ++FSI YK+GGFKL  +SD+NW NN DNGKST S   MLA  P+SF+ GLQ LTA STMEAELVA++L MKEAVFCSNMM EL   K F  +P+Y DNT TLH  GN ++S R KHIALR+FF++EL+ EG + IHYV T+D LAD+GTKH
Sbjct:  447 MYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKH 640          
BLAST of mRNA_H-elongata_contig67338.14342.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 8.000e-73
Identity = 122/194 (62.89%), Postives = 148/194 (76.29%), Query Frame = 0
Query:    1 MYLAQVSRYNIILAVNQLARAMSKPLKANTGAARHLLIYFAGVVNFSIIYKQGGFKLVAYSDANWGNNSDNGKSTPSCFVMLAYGPVSFKVGLQSLTAQSTMEAELVAASLIMKEAVFCSNMMVELYFEKGFNSVPLYLDNTLTLHFAGNLTYSPRAKHIALRYFFVQELMEEGMMIIHYVNTQDQLADLGTKH 194
            MY+AQV RY+I+ A  QLAR M+KP K +  AA+H L Y AG ++FSI YK+GGFKL  +SD+NW NN DNGKST S   MLA  P+SF+ GLQ LTA STMEAELVA++L MKEAVFCSNMM EL F K F  +P+Y DNT TLH  GN ++S R KHIALR+FF++EL+ EG + IHYV T+D LAD+GTKH
Sbjct:  786 MYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKH 979          
BLAST of mRNA_H-elongata_contig67338.14342.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.350e-69
Identity = 118/195 (60.51%), Postives = 150/195 (76.92%), Query Frame = 0
Query:    1 MYLAQVSRYNIILAVNQLARAMSKPLKANTGAARHLLIYFAGVVNFSIIYKQGGFKLVAYSDANWGNNSDNGKSTPSCFVMLAYGPVSFKVGLQSLTAQSTMEAELVAASLIMKEAVFCSNMMVELYFEKGFNSVPLYLDNTLTLHFAGNLTYSPRAKHIALRYFFVQELMEEGMMIIHYVNTQDQLADLGTKHL 195
            +YLAQ++RY+I+   +QLARAMS P K + GAA+HLL Y +G  +FSI YK+GGF L A SDANWGNN DN KS  S  +M++  PVSFK GLQSLTA ST+EAELVAA+L MKE +FC+NMM EL F   F S PLY+ NT TLH  GN T+S R KH+ALR+F+++E+++EG + IHY+ T+D LAD+GTKHL
Sbjct:  480 IYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHL 673          
BLAST of mRNA_H-elongata_contig67338.14342.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 3.760e-69
Identity = 119/194 (61.34%), Postives = 146/194 (75.26%), Query Frame = 0
Query:    1 MYLAQVSRYNIILAVNQLARAMSKPLKANTGAARHLLIYFAGVVNFSIIYKQGGFKLVAYSDANWGNNSDNGKSTPSCFVMLAYGPVSFKVGLQSLTAQSTMEAELVAASLIMKEAVFCSNMMVELYFEKGFNSVPLYLDNTLTLHFAGNLTYSPRAKHIALRYFFVQELMEEGMMIIHYVNTQDQLADLGTKH 194
            MY+AQV RY+I+ A  QLAR M+KP K +  AA+H L Y AG ++FSI YK+GGFKL  +SD+NW NN DNGKST S   +LA  P+SF+ GLQ LTA STMEAELVA++L M EAVF SNMM EL F K F  +P+Y DNT TLH  GN ++S R KHIALR+FF++EL+ EG + IHYV T+D LAD+GTKH
Sbjct: 1455 MYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKH 1648          
BLAST of mRNA_H-elongata_contig67338.14342.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 3.830e-67
Identity = 115/195 (58.97%), Postives = 141/195 (72.31%), Query Frame = 0
Query:    1 MYLAQVSRYNIILAVNQLARAMSKPLKANTGAARHLLIYFAGVVNFSIIYKQGGFKLVAYSDANWGNNSDNGKSTPSCFVMLAYGPVSFKVGLQSLTAQSTMEAELVAASLIMKEAVFCSNMMVELYFEKGFNSVPLYLDNTLTLHFAGNLTYSPRAKHIALRYFFVQELMEEGMMIIHYVNTQDQLADLGTKHL 195
            +YL+Q+ RY+I+ A +QLAR M+KP K + GAA+    Y AG   F I YK+GGFKL A++D+NWGNN DNGKST S   ML   P++FK GLQSLT QSTME ELVAA+L +KEAVFCSN++ EL F K    VPLY DNT TLH  GN +YS   KHIALR+FF++EL+ EG + IHYV      AD+GTKHL
Sbjct:  509 IYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHL 703          
BLAST of mRNA_H-elongata_contig67338.14342.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 4.610e-64
Identity = 108/195 (55.38%), Postives = 149/195 (76.41%), Query Frame = 0
Query:    1 MYLAQVSRYNIILAVNQLARAMSKPLKANTGAARHLLIYFAGVVNFSIIYKQGGFKLVAYSDANWGNNSDNGKSTPSCFVMLAYGPVSFKVGLQSLTAQSTMEAELVAASLIMKEAVFCSNMMVELYFEKGFNSVPLYLDNTLTLHFAGNLTYSPRAKHIALRYFFVQELMEEGMMIIHYVNTQDQLADLGTKHL 195
            MYLAQV+RY+I+   +Q ARAMS P K + GAA+HLL Y +G  +FSI YK+GGF L A S+AN G+N+DNGKS  S  +M++  P S K GLQSLTA ST+EAELVA++L MKE +FC+NMM EL F   F+S PL++D+T TL+  GN T+S   KH+ALR+F+++++++EG + IHY+ T+D LAD+GT++L
Sbjct:  567 MYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYL 761          
BLAST of mRNA_H-elongata_contig67338.14342.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 9.120e-62
Identity = 103/163 (63.19%), Postives = 122/163 (74.85%), Query Frame = 0
Query:    1 MYLAQVSRYNIILAVNQLARAMSKPLKANTGAARHLLIYFAGVVNFSIIYKQGGFKLVAYSDANWGNNSDNGKSTPSCFVMLAYGPVSFKVGLQSLTAQSTMEAELVAASLIMKEAVFCSNMMVELYFEKGFNSVPLYLDNTLTLHFAGNLTYSPRAKHIALR 163
            MY+AQV RY+I+ A  QLAR M+KP K +  AA+H L Y AG ++FSI YK+GGFKL  +SD+NW NN DNGKST S   MLA  P+SF+ GLQ LTA STMEAELVA++L MKEAVFCSNMM EL F K F  +P+Y DNT TLH  GN ++S R KHIALR
Sbjct:  103 MYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALR 265          
BLAST of mRNA_H-elongata_contig67338.14342.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 7.510e-56
Identity = 100/164 (60.98%), Postives = 121/164 (73.78%), Query Frame = 0
Query:   16 NQLARAMSKPLKANTGAARHLLIYFAGVVNFSIIYKQGGFKLVAYSDANWGNNSDNGKSTPSCFVMLAYGPVSFKVGLQSLTAQSTMEAELVAASLIMKEAVFCSNMMVELYFEKGFNSVPLYLDNTLTLHFAGNLTYSPRAKHIALRYFFVQELMEEGMMIIH 179
            +QLAR MSK  KA+ GAA+HLL    G  +F I YK+GGFKL A+SDANW +N DN +ST S  +M++  PVSFK GLQ LT  STMEAEL+AA+L MKEAVFCSNMM EL F + F  VPLY++NT TLH  GN  YS R KHIAL +F V+EL++EG + IH
Sbjct:  340 SQLARVMSKAAKAHMGAAKHLL---RGTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67338.14342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMK0_9PHAE2.010e-7660.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE4.580e-7662.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE9.700e-7462.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE8.000e-7362.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBU1_9PHAE1.350e-6960.51CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJH6_9PHAE3.760e-6961.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE3.830e-6758.97Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE4.610e-6455.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNV2_9PHAE9.120e-6263.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6N1_9PHAE7.510e-5660.98Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 7..173
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 32..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..195
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..31
NoneNo IPR availableTMHMMTMhelixcoord: 31..50
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 7..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67338contigH-elongata_contig67338:951..1535 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67338.14342.1mRNA_H-elongata_contig67338.14342.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig67338 951..1535 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig67338.14342.1 ID=prot_H-elongata_contig67338.14342.1|Name=mRNA_H-elongata_contig67338.14342.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MYLAQVSRYNIILAVNQLARAMSKPLKANTGAARHLLIYFAGVVNFSIIY
KQGGFKLVAYSDANWGNNSDNGKSTPSCFVMLAYGPVSFKVGLQSLTAQS
TMEAELVAASLIMKEAVFCSNMMVELYFEKGFNSVPLYLDNTLTLHFAGN
LTYSPRAKHIALRYFFVQELMEEGMMIIHYVNTQDQLADLGTKHL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like