prot_H-elongata_contig67068.14314.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig67068.14314.1
Unique Nameprot_H-elongata_contig67068.14314.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length228
Homology
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BLAST of mRNA_H-elongata_contig67068.14314.1 vs. uniprot
Match: D7FW38_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW38_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 8.730e-85
Identity = 147/229 (64.19%), Postives = 167/229 (72.93%), Query Frame = 0 
Query:    1 MNFGRAGLAVTLLVSFPLLVVPLTGTLVRAYREVAGVDTRSKSPLLNLDNSG--GVWPPQRDGEGSISMELEAPLLDPSAPPLHLAAALDDCCLDDTINAQGYLNSGSLDNKREPGQDAADVDISFQTRAWLTCGILSSELLLAFNISMVTDVWGFLGSTASVLIAFTLPCAAYLKIRLHLPRRREKLGQPLVKKWIAGVLLMISIVVVVVCTANSVYLVSTRKQEAGA 227
            MN GR GLAVTLLVSFPLL VPL GTLVRA RE+  VDTR K+PLLNL+  G   VWPP R G      ELEAPLL+PS  P  L  A DDC LDD     G +NSG         Q   + DI ++TRAWLT  ILSSEL+LAFNI+MVTDVWGFLGSTA+V++AFTLPCAAYLKIRLHLPRRREK   PL KKW+AGVL+ +S++  VVCTAN+ YL+S RKQ  GA
Sbjct:  288 MNVGRVGLAVTLLVSFPLLTVPLIGTLVRAQRELIAVDTRGKAPLLNLETPGVTSVWPPPRSGRVGDPTELEAPLLNPSTLPDDLDTASDDCFLDDA-GILGSMNSGPELTAAAGRQADMEEDIPYKTRAWLTLAILSSELVLAFNITMVTDVWGFLGSTANVMVAFTLPCAAYLKIRLHLPRRREKQAGPLYKKWVAGVLVTLSVLAAVVCTANNFYLLSARKQAGGA 515
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BLAST of mRNA_H-elongata_contig67068.14314.1 vs. uniprot
Match: A0A835ZAV6_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.110e-14
Identity = 72/228 (31.58%), Postives = 102/228 (44.74%), Query Frame = 0 
Query:    2 NFGRAGLAVTLLVSFPLLVVPLTGTLVRAYREVAGVDTRSKSPLLNLDNSGGVWPPQRDGEGSISMELEAPLLDPSAPPLHLAAALDDCCLDDTINAQGYLNSGSLDNKREP--------GQDAADVDISFQTRAWLTCGILSSELLLAFNISMVTDVWGFLGSTASVLIAFTLPCAAYLKIRLHLPRRREKLGQPLVKKWIAGVLLMISIVVVVVCTANSVYLVSTR 221
            N GR GL VT+++SFPLLVVP    L+R + +      R                                    +A      A L+   L  T +        S  + R          G+DA  +  S   RA LT  +L S L LA  I+ VTDVWG LGS+ +V++AF +P AAYL IR    RR     +   ++  A  LL++S  + V CTAN+VY++++R
Sbjct:  298 NAGRLGLVVTIMLSFPLLVVPCRDALLRVHADCRYGAPRPSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASDHDAFANLEVSLLTPTSDGGRETVKSSGGSPRXXXXXXXXAGGEDA--IATSLCLRAALTAPLLGSALALASLITRVTDVWGVLGSSVNVVVAFCVPAAAYLAIR----RRAHHNARSRARRAGAAALLVVSACLAVACTANNVYIIASR 519
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67068.14314.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW38_ECTSI8.730e-8564.19Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZAV6_9STRA1.110e-1431.58Transmembrane amino acid transporter protein-domai... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013057Amino acid transporter, transmembrane domainPFAMPF01490Aa_transcoord: 3..208
e-value: 1.0E-9
score: 37.6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..21
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 151..173
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..150
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 194..218
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 219..227
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 174..193
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.669
NoneNo IPR availableTMHMMTMhelixcoord: 194..216
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 151..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67068contigH-elongata_contig67068:155..2748 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67068.14314.1mRNA_H-elongata_contig67068.14314.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig67068 143..2748 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig67068.14314.1 ID=prot_H-elongata_contig67068.14314.1|Name=mRNA_H-elongata_contig67068.14314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
MNFGRAGLAVTLLVSFPLLVVPLTGTLVRAYREVAGVDTRSKSPLLNLDN
SGGVWPPQRDGEGSISMELEAPLLDPSAPPLHLAAALDDCCLDDTINAQG
YLNSGSLDNKREPGQDAADVDISFQTRAWLTCGILSSELLLAFNISMVTD
VWGFLGSTASVLIAFTLPCAAYLKIRLHLPRRREKLGQPLVKKWIAGVLL
MISIVVVVVCTANSVYLVSTRKQEAGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM