prot_H-elongata_contig67000.14306.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig67000.14306.1
Unique Nameprot_H-elongata_contig67000.14306.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length404
Homology
BLAST of mRNA_H-elongata_contig67000.14306.1 vs. uniprot
Match: D8LSC4_ECTSI (U2 small nuclear ribonucleoprotein A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC4_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 5.670e-100
Identity = 168/201 (83.58%), Postives = 182/201 (90.55%), Query Frame = 0
Query:    1 VTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIATDLGTQLPNLSCLILTNNKLSTLADLEGLRTCKKLAILSLMHNEVVNKQYYRLYAINLVPSLKQLDFQKVTLKASPLEREEAGRLARSQAGQVMRKDVAQEAVKAKIFTPGKPAAAEQKLTDEHRAIYAERIAKATTVEEVEMLSRKIQAGIIPSATYK 201
            VTQDQFDA+DFSDNEIKKLDNFPRYKRLSSLLLCNNHVS+I+ DLGT LPNLSCLILTNNKLSTLA+L+GL TC KL +LSL+HNEVVNKQYYRLY INL+PSLKQLDFQKVT+K    ERE A RLARSQAGQ M +DVAQ+A KAK FTPG PAA EQKLTDEHRAIYA+RIAKATTVEE+EMLS+KIQAGIIPSA YK
Sbjct:   38 VTQDQFDAMDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSKISEDLGTALPNLSCLILTNNKLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLIPSLKQLDFQKVTVK----ERESAVRLARSQAGQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYK 234          
BLAST of mRNA_H-elongata_contig67000.14306.1 vs. uniprot
Match: A0A6H5L3Q9_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q9_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.520e-51
Identity = 103/141 (73.05%), Postives = 114/141 (80.85%), Query Frame = 0
Query:   61 KLSTLADLEGLRTCKKLAILSLMHNEVVNKQYYRLYAINLVPSLKQLDFQKVTLKASPLEREEAGRLARSQAGQVMRKDVAQEAVKAKIFTPGKPAAAEQKLTDEHRAIYAERIAKATTVEEVEMLSRKIQAGIIPSATYK 201
            +LSTLA+L+GL TC KL +LSL+HNEVVNKQYYRLY INLVPSLKQLDFQKVT+KA                GQ M +DVAQ+A KAK FTPG PAA EQKLTDEHRAIYA+RIAKATTVEE+EMLS+KIQAGIIPSA YK
Sbjct:    2 QLSTLAELKGLGTCTKLTMLSLLHNEVVNKQYYRLYMINLVPSLKQLDFQKVTVKA----------------GQAMIQDVAQQAEKAKTFTPGAPAAEEQKLTDEHRAIYADRIAKATTVEEIEMLSKKIQAGIIPSANYK 126          
BLAST of mRNA_H-elongata_contig67000.14306.1 vs. uniprot
Match: A0A835ZE59_9STRA (Leucine-rich repeat-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE59_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.480e-47
Identity = 106/210 (50.48%), Postives = 141/210 (67.14%), Query Frame = 0
Query:    1 VTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIATDLGTQLPNLSCLILTNNKLSTLADLEGLRTCKKLAILSLMHNEVVNKQYYRLYAINLVPSLKQLDFQKVTLKASPLEREEAGRLARSQAGQVMRKDVAQEAVKAKIFTPGKPAAAEQKLTDEHRAIYAERIAKATTVEEVEMLSRKIQAGIIPSATYKIQTSAAGAA 210
            VTQDQFD IDFSDNEI+KLDNFPR  RL++LLL NN ++RI  D+G +LPNLSCL+LTNN +S L++L+ L  C++L +LSL+ N V   Q+YRLY I+ +PSLK LDF KV  +    ER  A RL +S AG+ M +D+A   ++AK F PG   AA   LT   R      I +A T EE++ L R ++AGI P+   ++  +AA AA
Sbjct:   38 VTQDQFDTIDFSDNEIQKLDNFPRMTRLTTLLLSNNVIARIGQDIGKKLPNLSCLVLTNNHISVLSELDPLGYCQQLTMLSLLENPVTRAQHYRLYVIHKIPSLKALDFCKVKKE----ERARAERLFQSAAGRAMEEDIA---LQAKTFVPG--GAARAPLTPAQRTQVIAMIQRAMTTEEIDRLERMLEAGIYPAERKELDAAAAAAA 238          
BLAST of mRNA_H-elongata_contig67000.14306.1 vs. uniprot
Match: A0A7S2G9L1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9L1_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.230e-44
Identity = 106/223 (47.53%), Postives = 146/223 (65.47%), Query Frame = 0
Query:    1 VTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIATDLGTQLPNLSCLILTNNKLSTLADLEGLRTCKKLAILSLMHNEVVNKQYYRLYAINLVPSLKQLDFQKVTLKASPLEREEAGRLARSQAGQVMRKDVAQEAVKAKIFTPGK-------PAA---AEQKLTDEHRAIYAERIAKATTVEEVEMLSRKIQAGIIPSATYKIQTSAAGAANGS 213
            VTQDQFD +DF+DNEIK++DNFP +KRLS+LLL NNHV+R++  L  QLPNL CL         L++++ L  C KL +LS ++N ++ +Q+YRLY I  +P LK LDF KV      +EREEA +L RS AG++M++DV  E+   K FTPG+       P A   AEQK  D+ RA+    IA A+T EEV+ + R+++AG+IP+   K    A GAA G+
Sbjct:   39 VTQDQFDVLDFTDNEIKRVDNFPTFKRLSTLLLSNNHVTRLSPTLSEQLPNLDCLXXXXXXXXNLSEVDNLIGCTKLTMLSFVNNPIIRRQHYRLYVIAKLPQLKALDFVKV----KAIEREEAAKLFRSAAGRLMQQDVEAES---KTFTPGEDIPSTTNPMANLTAEQK--DQVRAV----IAAASTPEEVDRIERQLKAGVIPT-LKKAAAPAGGAAEGT 247          
BLAST of mRNA_H-elongata_contig67000.14306.1 vs. uniprot
Match: A0A7S3XKJ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ1_HETAK)

HSP 1 Score: 167 bits (423), Expect = 4.850e-44
Identity = 100/210 (47.62%), Postives = 142/210 (67.62%), Query Frame = 0
Query:    1 VTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIATDLGTQLPNLSCLILTNNKLSTLADLEGLRTCKKLAILSLMHNEVVNKQYYRLYAINLVPSLKQLDFQKVTLKASPLEREEAGRLARSQAGQVMRKDVAQEAVKAKIFTPGKPAAAEQK-LTDEHRAIYAERIAKATTVEEVEMLSRKIQAGIIPSATYKIQTSAAGA 209
             TQD FD IDFSDNEIKKL+NFPR +RL++LL  NNH+S+IA  +  Q+PNLS L     ++  LA+L+ L+  +KL +LSL+ N VV +Q+YRLY I+  P+LK LDF+KV  +    ER+EA RL +S+AGQ M+ DV +E    K F  G+    E+K LT++ + +  E I  ATT EEV+ L R+++AGI+P+   K  ++ +GA
Sbjct:   38 ATQDMFDTIDFSDNEIKKLENFPRMERLTTLLFNNNHISKIAESIKDQVPNLSTLXXXXXRIQHLAELDSLQGLRKLTLLSLLENPVVRRQHYRLYVIHRCPALKYLDFRKVKQQ----ERQEAARLFKSKAGQQMQDDVQKEI---KTFQAGEKQEREKKRLTEDQKNLIREAIKNATTPEEVDKLERQLKAGIMPNLAQKGPSNTSGA 240          
BLAST of mRNA_H-elongata_contig67000.14306.1 vs. uniprot
Match: E9HAB1_DAPPU (LRRcap domain-containing protein n=6 Tax=Daphnia TaxID=6668 RepID=E9HAB1_DAPPU)

HSP 1 Score: 157 bits (396), Expect = 9.250e-42
Identity = 98/196 (50.00%), Postives = 129/196 (65.82%), Query Frame = 0
Query:    1 VTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIATDLGTQLPNLSCLILTNNKLSTLADLEGLRTCKKLAILSLMHNEVVNKQYYRLYAINLVPSLKQLDFQKVTLKASPLEREEAGRLARSQAGQVMRKDVAQEAVKAKIFTPGKPAAAEQKLTDEHRAIYAERIAKATTVEEVEMLSRKIQAGIIP 196
             T DQFD IDFSDN+I+KLD FP  +R+ SLLL NN + RIA  LG  +PNL  L+LTNN L  L DL+ L    KL  LSL+ N V NKQ+YR Y IN +PSL+ LDF+KV LK    ERE A  L +S+ G+V+ K++AQ++         K  A   K T+E RAI  E +A A+T+EEVE L++ ++AG++P
Sbjct:   39 ATLDQFDTIDFSDNDIRKLDGFPLLRRIKSLLLNNNRILRIADGLGEVIPNLETLVLTNNHLQELGDLDPLAEFSKLTYLSLLSNPVANKQHYRSYVINKLPSLRVLDFRKVKLK----EREAARDLFKSKKGKVLAKEIAQKSKFLSAEAGNK--APIGKNTNEARAI-REAVANASTLEEVERLNQMLRAGVVP 227          
BLAST of mRNA_H-elongata_contig67000.14306.1 vs. uniprot
Match: A0A7S2WMG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMG2_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.300e-41
Identity = 96/199 (48.24%), Postives = 131/199 (65.83%), Query Frame = 0
Query:    1 VTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIATDLGTQLPNLSCLILTNNKLSTLADLEGLRTCKKLAILSLMHNEVVNKQYYRLYAINLVPSLKQLDFQKVTLKASPLEREEAGRLARSQAGQVMRKDVAQEAVKAKIFTPGK--PAAAEQKLTDEHRAIYAERIAKATTVEEVEMLSRKIQAGIIPS 197
            VT+DQ+D +DFSDNEIKKL+NFPR+ RLS+LLL NNH++RI+  LG QL +L            L++++ L  C KL  LSL++N V  +Q+YRLY I+ +PS+K LDF KV     P ER +A RL +S AG++M++DV  EA     FTPG+  P+      T+E  A     IA ATT EEV+ + R+++AGIIPS
Sbjct:   39 VTKDQYDTLDFSDNEIKKLENFPRFSRLSTLLLNNNHIARISPTLGEQLLSLQXXXXXXXXXXQLSEVDHLVGCTKLTTLSLVNNPVARRQHYRLYVIHKLPSVKVLDFSKV----KPQERADAARLFKSAAGKLMQQDVDAEA---STFTPGEDMPSNPMANFTEEQMAQVRAVIAAATTPEEVDRVERQLKAGIIPS 230          
BLAST of mRNA_H-elongata_contig67000.14306.1 vs. uniprot
Match: A0A3Q1GBX3_9TELE (U2 small nuclear ribonucleoprotein A'-like n=2 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1GBX3_9TELE)

HSP 1 Score: 155 bits (391), Expect = 1.660e-41
Identity = 93/199 (46.73%), Postives = 127/199 (63.82%), Query Frame = 0
Query:    1 VTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIATDLGTQLPNLSCLILTNNKLSTLADLEGLRTCKKLAILSLMHNEVVNKQYYRLYAINLVPSLKQLDFQKVTLKASPLEREEAGRLARSQAGQVMRKDVAQEAVKAKIFTPGKPAAAEQKLTDEHRA---IYAERIAKATTVEEVEMLSRKIQAGIIP 196
             T DQFD +DFSDNEI+KLD FP  +RL +LL+ NN + RI  +L   LP+L+ L+LTNN +  L DL+ L T K L +LSL+ N V NK++YRLY IN +P ++ LDFQKV LK    ER+EA ++ + + G  + KD+A+   + K FTPG  A  E+K T   +A        IA A+++ EVE L   +QAG IP
Sbjct:   16 ATLDQFDTVDFSDNEIRKLDGFPLLRRLKTLLMNNNRICRIGENLEQSLPSLTELVLTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYVINKIPQIRVLDFQKVKLK----ERQEAEKMFKGKRGAQLAKDIAR---RTKTFTPGVAAQPEKKRTGPSQADVDAIKNAIANASSLAEVERLKGMLQAGQIP 207          
BLAST of mRNA_H-elongata_contig67000.14306.1 vs. uniprot
Match: UPI0002657A99 (U2 small nuclear ribonucleoprotein A' n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002657A99)

HSP 1 Score: 156 bits (395), Expect = 2.290e-41
Identity = 93/198 (46.97%), Postives = 132/198 (66.67%), Query Frame = 0
Query:    1 VTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIATDLGTQLPNLSCLILTNNKLSTLADLEGLRTCKKLAILSLMHNEVVNKQYYRLYAINLVPSLKQLDFQKVTLKASPLEREEAGRLARSQAGQVMRKDVAQEAV--KAKIFTPGKPAAAEQKL---TDEHRAIYAERIAKATTVEEVEMLSRKIQAG 193
             T DQFD IDFSDN+I+KL+ FP  KR+ SLLL NN +SRIA +L  QLP+L  LILTNN +  L DL+ L T K L  LS++ N V  K++YRLY I  VP L+ LDF+++ +     EREEA ++ + + G+ + K++ Q++   K K FTPG+PA  E      TD+ +A+    +AKATT+EEVE L++ +++G
Sbjct:   39 ATLDQFDTIDFSDNDIRKLEGFPYLKRIKSLLLNNNRISRIADNLEEQLPSLETLILTNNNVGNLGDLDALSTVKTLRFLSVLKNPVALKKHYRLYVIFRVPQLRILDFKRIKMA----EREEAKKVFKGKKGEALAKEIGQKSAPEKVKTFTPGEPAKLENTFAMTTDDQKAL-KNALAKATTLEEVERLTQLLKSG 231          
BLAST of mRNA_H-elongata_contig67000.14306.1 vs. uniprot
Match: A0A3Q3N132_9LABR (Small nuclear ribonucleoprotein polypeptide A' n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3N132_9LABR)

HSP 1 Score: 155 bits (391), Expect = 3.210e-41
Identity = 94/199 (47.24%), Postives = 126/199 (63.32%), Query Frame = 0
Query:    1 VTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIATDLGTQLPNLSCLILTNNKLSTLADLEGLRTCKKLAILSLMHNEVVNKQYYRLYAINLVPSLKQLDFQKVTLKASPLEREEAGRLARSQAGQVMRKDVAQEAVKAKIFTPGKPAAAEQKLTDEHRA---IYAERIAKATTVEEVEMLSRKIQAGIIP 196
             T DQFD +DFSDNEI+KLD FP  KRL +LL+ NN + R+  +L   LP L+ LILTNN +  L DL+ L T K L +LSL+ N V NK++YRLY IN +P ++ LDFQKV  K    ER+EA ++ + + G  + KD+A+   + K FTPG PA  E+K T   +A        IA A+++ EVE L   +QAG IP
Sbjct:   39 ATLDQFDTVDFSDNEIRKLDGFPLLKRLKTLLMNNNRICRVGENLEQSLPCLTELILTNNNIQELGDLDPLATVKTLTLLSLLRNPVTNKKHYRLYMINKIPQIRVLDFQKVKQK----ERQEAEKMFKGKRGAQLAKDIAK---RTKTFTPGVPAQLEKKKTGPSQADVEAIKNAIANASSLAEVERLKGMLQAGQIP 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67000.14306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSC4_ECTSI5.670e-10083.58U2 small nuclear ribonucleoprotein A n=1 Tax=Ectoc... [more]
A0A6H5L3Q9_9PHAE3.520e-5173.05SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZE59_9STRA1.480e-4750.48Leucine-rich repeat-domain-containing protein n=1 ... [more]
A0A7S2G9L1_9STRA1.230e-4447.53Hypothetical protein (Fragment) n=2 Tax=Florenciel... [more]
A0A7S3XKJ1_HETAK4.850e-4447.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
E9HAB1_DAPPU9.250e-4250.00LRRcap domain-containing protein n=6 Tax=Daphnia T... [more]
A0A7S2WMG2_9STRA1.300e-4148.24Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A3Q1GBX3_9TELE1.660e-4146.73U2 small nuclear ribonucleoprotein A'-like n=2 Tax... [more]
UPI0002657A992.290e-4146.97U2 small nuclear ribonucleoprotein A' n=1 Tax=Gale... [more]
A0A3Q3N132_9LABR3.210e-4147.24Small nuclear ribonucleoprotein polypeptide A' n=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..142
e-value: 1.7E-27
score: 97.4
NoneNo IPR availablePFAMPF14580LRR_9coord: 2..141
e-value: 3.3E-43
score: 147.2
NoneNo IPR availablePANTHERPTHR10552U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Acoord: 1..227
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 5..114
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 27..48
score: 5.232
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 51..72
score: 8.213
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 5..26
score: 5.54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67000contigH-elongata_contig67000:112..3211 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67000.14306.1mRNA_H-elongata_contig67000.14306.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig67000 112..3211 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig67000.14306.1 ID=prot_H-elongata_contig67000.14306.1|Name=mRNA_H-elongata_contig67000.14306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=404bp
VTQDQFDAIDFSDNEIKKLDNFPRYKRLSSLLLCNNHVSRIATDLGTQLP
NLSCLILTNNKLSTLADLEGLRTCKKLAILSLMHNEVVNKQYYRLYAINL
VPSLKQLDFQKVTLKASPLEREEAGRLARSQAGQVMRKDVAQEAVKAKIF
TPGKPAAAEQKLTDEHRAIYAERIAKATTVEEVEMLSRKIQAGIIPSATY
KIQTSAAGAANGSAPPAVAATSGIAPSEAKAEAVVGTSEAEAKEKAEEGA
EGAGTEKALPTTSSMDVEKGHGEVELSAAATEAAADKRNGNVEDEAPEDG
SDLSSAGAGDAMVVENGGNDEREEKEQESAAMDVTGGAEAGDVGGEAKDS
EQDGEKEVAEAAEQEQEEEGAGDMEQEEEGAGEPKLSEAQIKKFKVQRVA
FSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt