prot_H-elongata_contig66852.14284.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66852.14284.1
Unique Nameprot_H-elongata_contig66852.14284.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length397
Homology
[Close]
BLAST of mRNA_H-elongata_contig66852.14284.1 vs. uniprot
Match: A0A6H5J7N1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N1_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.040e-32
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 0 
Query:  294 GGLRSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLKCVANRPGVDMKQELKREAVSLLGPELAREAFEASLTETRNDFYRQRS 379
            GG+RSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLK  ++  GVDMKQE+KREAVSLLGPELAREAFEASL+ETRN+F+RQRS
Sbjct:  308 GGMRSGLSRKFVRSLMRHLNMRADSRQREELRSMVETLKHRSSVRGVDMKQEIKREAVSLLGPELAREAFEASLSETRNEFHRQRS 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66852.14284.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7N1_9PHAE1.040e-3287.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66852contigH-elongata_contig66852:851..2041 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66852.14284.1mRNA_H-elongata_contig66852.14284.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66852 851..2042 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66852.14284.1 ID=prot_H-elongata_contig66852.14284.1|Name=mRNA_H-elongata_contig66852.14284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=397bp
RGLSDIYSHYHSHVLLQYECCGDSVGTGRTDPMATQVSLHSGVGALGHGL
AAVMDPPLSPTARRQILFSQQQPEPAAVSIRHDAAVAPTAVRAVASVYTT
RSGGGYHRVTDQLSAFATYPEREAHPLDEREREEDIMPAATTAAPGAAPG
GVNGGVRTVPFADVEGDRNTAVAVNSTGGVSAGAVTNVMPEDVDMNFLDD
GVISMATDDVDLASVLPVTAAANRGLESNGGRRRSSVGSAVGVETGSSPY
QAPTFRRGSVSGGRIDPQNGVISSSTSSRRRRSTLGGGGGGGTGGLRSGL
SRKFVRSLMRHLNMRADSRQREELRSMVETLKCVANRPGVDMKQELKREA
VSLLGPELAREAFEASLTETRNDFYRQRSVAAAAAAEAAASTEALGG
back to top