prot_H-elongata_contig66592.14264.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66592.14264.1
Unique Nameprot_H-elongata_contig66592.14264.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length73
Homology
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BLAST of mRNA_H-elongata_contig66592.14264.1 vs. uniprot
Match: A0A225UWJ7_9STRA (Reverse transcriptase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UWJ7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.290e-8
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 0 
Query:    1 IQPIRQHVTGKRFALVTDNSAF----TFRNLDLKLYRWALNLQEFDVYLRLQAGCANLGPNCLVRLPYPAQNQTPVD 73
            I+  R ++ G+RF LVTDNSA     T  NL  KL+RWAL LQE++  ++ + G  N+  + L R P  A  QT V+
Sbjct:   27 IKMFRPYLYGRRFTLVTDNSALKWLMTSPNLTGKLHRWALVLQEYEFEVQYRPGSQNVVADALSRAPVTASVQTAVE 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66592.14264.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A225UWJ7_9STRA9.290e-842.86Reverse transcriptase n=1 Tax=Phytophthora megakar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66592contigH-elongata_contig66592:2812..3042 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66592.14264.1mRNA_H-elongata_contig66592.14264.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66592 2812..3042 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66592.14264.1 ID=prot_H-elongata_contig66592.14264.1|Name=mRNA_H-elongata_contig66592.14264.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
IQPIRQHVTGKRFALVTDNSAFTFRNLDLKLYRWALNLQEFDVYLRLQAG
CANLGPNCLVRLPYPAQNQTPVD
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