prot_H-elongata_contig66528.14251.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66528.14251.1
Unique Nameprot_H-elongata_contig66528.14251.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length226
Homology
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 1.790e-79
Identity = 139/227 (61.23%), Postives = 169/227 (74.45%), Query Frame = 0
Query:    2 VQHPDSKILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDE--ISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 226
            VQHPDS+ LLT    I+ AW+ HY RLA DVTGNS+  +KW  W    QR RH+T LD     EEMV AL R+KRHK PG+DG+PAD  +LA G+E   SPMGK +L ++NL+W  +VIP    ESTVV IPKKG++TDMN++RGISLM T LKVL+++IS RL++A ER +LFS +QAGFR +EEC TQ ACLLEI + RK R K +YL FVDLKKAYDTVP EAL
Sbjct:  441 VQHPDSRALLTSANDISAAWRTHYQRLAADVTGNSRKSDKWNAWRAAPQR-RHMTELDGPILREEMVEALARIKRHKSPGNDGVPADFLELAGGEEGSQSPMGKTVLGMLNLIWKTRVIPTDRRESTVVPIPKKGDMTDMNNHRGISLMNTVLKVLVMIISTRLNSAFERHKLFSQSQAGFRTREECVTQAACLLEICQRRKFRRKSAYLMFVDLKKAYDTVPQEAL 666          
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A2R5FJC4_9STRA (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FJC4_9STRA)

HSP 1 Score: 166 bits (420), Expect = 4.160e-46
Identity = 85/194 (43.81%), Postives = 128/194 (65.98%), Query Frame = 0
Query:    1 SVQHPDSKILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAI-GDEIS--PMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVA 191
            +++ PDS  LL E   IA AW  HYGRLA D TG+S+  + W +  P+++    I GL+   + EE+  A+  +K ++ PG DG+PA++++L + G E +  P  KA+  V+N ++    +P+ W  STVVSIPKKG+L DMN+YRGISLM T LK++M +++ R+  A E + +++  Q GFRR+EECA QVA
Sbjct:  189 ALRDPDSGELLLEAPEIAGAWATHYGRLAADATGHSRDDDHWAQLWPEAEEREEIEGLNDWISREEIASAILGMKNNRAPGDDGVPAELWRLLVRGAEATEAPAMKAIENVINALFFKAFVPECWCTSTVVSIPKKGDLEDMNNYRGISLMSTFLKIIMRVVARRIDRAFETQSMWAREQGGFRRREECAAQVA 382          
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R1YP44_9FUNG (LINE-1 retrotransposable element ORF2 protein (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YP44_9FUNG)

HSP 1 Score: 171 bits (434), Expect = 2.050e-45
Identity = 91/211 (43.13%), Postives = 124/211 (58.77%), Query Frame = 0
Query:   18 AEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDE--ISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 226
            +EAW  H+  LA+D TGNS+S  KW      S+ +   T  D + TW E+  AL     +K PGSDGIP++V+KL   +E   SP  K    +VN +W  + IP     S +V IPKKG++ D N+YRGISL+ T  KVL  +I+ RLS    +  +    QAGFR +EEC  Q   L E+ + RKI G  +++ F+D  KAYD VPH+AL
Sbjct: 1037 SEAWAAHFEELAKDSTGNSRSAEKWSNMGLGSEAV--YTECDAILTWTEICAALKSTPNNKSPGSDGIPSEVWKLVQNEEEPTSPFAKLFSKLVNKIWEDEKIPQKLDPSVIVPIPKKGDMRDPNNYRGISLIPTLSKVLSKIIARRLSKIDNKHDILVKEQAGFRSREECVAQATALYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQAL 1245          
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A498SLY1_ACAVI (Reverse transcriptase domain-containing protein n=1 Tax=Acanthocheilonema viteae TaxID=6277 RepID=A0A498SLY1_ACAVI)

HSP 1 Score: 168 bits (426), Expect = 6.160e-45
Identity = 89/216 (41.20%), Postives = 132/216 (61.11%), Query Frame = 0
Query:   17 IAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGD------EISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 226
            IAE W+ HY  L ED TG+SK+   W ++    +    ++  ++ F+W E+V A+  L  +K  G DGIPA+ +KL   D        + +GK L ++   +WV   IP+ W  + ++SIPKKG+LT  ++YRGISL+    K+L  ++S R+S  +E   +    QAGFR++EEC  QV  L+E  + RK +G+P+YLAF+D KKAYD V HEAL
Sbjct:  314 IAEVWREHYRNLFEDSTGHSKNKEYWSKFPIHIRSTVELS--NIPFSWSEIVLAVRSLSTNKAAGPDGIPAEFFKLINNDMDTGLAPCTKLGKFLFSIFEKVWVSGKIPNSWNLAKIISIPKKGDLTITDNYRGISLIPVISKILSKMLSSRISYHLESNGIICKEQAGFRKREECLGQVIALVEAIQRRKHKGEPTYLAFIDFKKAYDMVAHEAL 527          
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R1YAQ4_9FUNG (RNA-directed DNA polymerase from mobile element jockey (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAQ4_9FUNG)

HSP 1 Score: 168 bits (425), Expect = 3.060e-44
Identity = 92/222 (41.44%), Postives = 128/222 (57.66%), Query Frame = 0
Query:    7 SKILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDE--ISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 226
            S+ L+T+    AE W  H+  LA D TGNS+S  KWR     S  +   T  D   +W E+  AL     +K PGSDGIP++ +KL   ++   SP  K LL ++N +W  + IP     S VV IPKKG++ + N+YRGISL+ T  KV+  +IS RL     +  + +  QAGFR +EEC  Q   L E+ + RKI G  +++ F+D  KAYD VPH+AL
Sbjct:  402 SRQLVTDSETKAEVWAAHFEELARDSTGNSRSAEKWRDIGSDSTEV--FTECDTPLSWTEIRAALKSTPNNKSPGSDGIPSEAWKLVQDEDEPTSPFAKLLLRLINGIWDAEKIPKQLDPSVVVPIPKKGDMRESNNYRGISLIPTLSKVVSKIISRRLCKIDNKYNILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQAL 621          
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 167 bits (424), Expect = 4.390e-44
Identity = 96/244 (39.34%), Postives = 137/244 (56.15%), Query Frame = 0
Query:    2 VQHPDSKILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDEI---------------SPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPK-KGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERE---RLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 226
            ++HP SK +LT+   IA+AW +++G LAED TG+      W R       L  + GL+    W+E+  AL  +K  K PG DG+ AD  KL  G  +               +PM   L  ++  MW  + +P VW  + VV I K +G+  +M +YRGISL+   LK+L  +I+ RL++ ++ +   RL    QAGFR +EEC   +  L E+ + R+I   PSYLAF+DLKKAYDTVPH AL
Sbjct:  618 IKHPHSKEVLTDPLEIAQAWNLYFGELAEDRTGHQSDTAHWERVGSSIPSLPPLEGLNRPLQWKEVRAALLSMKNGKAPGCDGVSADFLKLCCGQSLEEEDDDGDDAETHPPNPMAAVLFKLLCAMWAQETVPSVWNMAEVVPIFKNRGDQLEMENYRGISLIPVVLKLLCTIITRRLASMIDDQINPRLHKE-QAGFRSREECLGHIVALYEVLRRRQIMQLPSYLAFIDLKKAYDTVPHGAL 860          
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R1X7T5_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X7T5_9FUNG)

HSP 1 Score: 167 bits (423), Expect = 5.900e-44
Identity = 88/220 (40.00%), Postives = 131/220 (59.55%), Query Frame = 0
Query:   10 LLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDEI---SPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 226
            L+T+    AE W  H+ +LA+D TGNS+S +KW+     +         D   +W E+  AL     +K PGSDGIP++V+KL + +EI   SP+ K +  ++N +W  + +P     S VV IPKKG++ D N+YRGISL+ T  KV+  +++ RL A   +  + +  QAGFR +EEC  Q   L E+ + RKI G  +++ F+D  KAYD VPH+AL
Sbjct:  582 LITDTDAKAEVWATHFEKLAKDSTGNSRSADKWKNMGTIAAVFPEC---DAPLSWAEICDALKTTPNNKSPGSDGIPSEVWKL-VQNEIEPTSPLAKVISKIINRIWDSENMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIPTLAKVISKIVARRLCAIDNKYEILAKEQAGFRSREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHQAL 797          
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R1Y7R2_9FUNG (Putative RNA-directed DNA polymerase from transposon BS n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y7R2_9FUNG)

HSP 1 Score: 166 bits (420), Expect = 1.430e-43
Identity = 89/219 (40.64%), Postives = 126/219 (57.53%), Query Frame = 0
Query:   10 LLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDE--ISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 226
            L+T+    AE W  H+  LA+D TGNS+S  KWR            T  D   +W E+  AL     +K PGSDGIP++V+K+   ++   SP+ K +L ++  +W  + IP     S V+ IPKKG++ D N+YRGISL+ T  KVL  +I+ RL     +  + +  QAGFR +EEC  Q   L E+ + RKI G  +++ F+D  KAYD VPHEAL
Sbjct:  343 LITDSEAKAEVWASHFEELAKDSTGNSRSAKKWR--DIGKNYTAEFTECDTPLSWAEICAALKSTPNNKSPGSDGIPSEVWKMVQYEDEPTSPLAKLILRLITGIWDAEKIPKQLDPSVVIPIPKKGDIRDPNNYRGISLIPTLSKVLSKIIARRLCKIDNKYSILAKEQAGFRTREECVAQATTLYEVVRRRKISGLSTWIGFIDFAKAYDRVPHEAL 559          
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R0GS88_9FUNG (LINE-1 reverse transcriptase-like protein n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GS88_9FUNG)

HSP 1 Score: 162 bits (411), Expect = 1.820e-43
Identity = 87/222 (39.19%), Postives = 129/222 (58.11%), Query Frame = 0
Query:    8 KILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDEISP---MGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYDTVPHEAL 226
            K L+ +     + W+ H+  LA D TGNS++ +KW         +      D    W E+  AL  +  +K  G+DGIP +V+KL I  EISP   M K +  ++  +W    IP++   S VV +PKKGNL+D N+YRGISL+ T +K+L  +++ +LSA  E+ ++ +  Q GFR +EEC +Q   L EI K RK+ G  +++ F+D  KAYD VPH AL
Sbjct:  265 KNLIVDSESRLKVWENHFKNLATDTTGNSRTADKWEPMLDYD--IESFPECDEPIKWSEITTALKEIPNNKASGTDGIPNEVWKL-IKSEISPTSKMAKIVFKILKSIWDTGNIPEIMSTSIVVPVPKKGNLSDPNNYRGISLIPTFIKILAKVLANKLSAISEKYKIIAKEQGGFRTREECVSQATILYEIVKRRKLMGLETWIGFIDFSKAYDLVPHMAL 483          
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Match: A0A1R1XRD3_9FUNG (Transposon TX1 uncharacterized (Fragment) n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XRD3_9FUNG)

HSP 1 Score: 160 bits (404), Expect = 5.540e-43
Identity = 87/212 (41.04%), Postives = 122/212 (57.55%), Query Frame = 0
Query:   10 LLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQRLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDE--ISPMGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGTDLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHRKIRGKPSYLAFVDLKKAYD 219
            L+T+    +EAW  H+  LA+D TGNS+S  KW +   KS  +      D   TW+E+ GAL     +K PG DGIP++++KL   +E   SP  K L  +V  MW  + +P     S VV IPKKG++ D N+YRGISL+ T  KV+  +I+ RL     +  + +  QAGFR +EEC  Q   L EI + RKI G  +++ F+D  KAYD
Sbjct:  262 LITDAEAKSEAWAAHFEELAKDNTGNSRSKEKWSKIVNKSVGV--FPDCDAPLTWKEICGALKATPNNKSPGCDGIPSEIWKLVQHEEEPTSPFAKLLSRLVKGMWQAERMPKQMDPSVVVPIPKKGDMRDPNNYRGISLIQTLAKVVSKIIARRLCIIDRKHDILAKEQAGFRSREECVAQATTLYEIVRRRKISGLSTWIGFIDFAKAYD 471          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66528.14251.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE1.790e-7961.23Reverse transcriptase domain-containing protein n=... [more]
A0A2R5FJC4_9STRA4.160e-4643.81LINE-1 retrotransposable element ORF2 protein (Fra... [more]
A0A1R1YP44_9FUNG2.050e-4543.13LINE-1 retrotransposable element ORF2 protein (Fra... [more]
A0A498SLY1_ACAVI6.160e-4541.20Reverse transcriptase domain-containing protein n=... [more]
A0A1R1YAQ4_9FUNG3.060e-4441.44RNA-directed DNA polymerase from mobile element jo... [more]
A0A3M2C3P5_9GAMM4.390e-4439.34Reverse transcriptase domain-containing protein n=... [more]
A0A1R1X7T5_9FUNG5.900e-4440.00RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R1Y7R2_9FUNG1.430e-4340.64Putative RNA-directed DNA polymerase from transpos... [more]
A0A1R0GS88_9FUNG1.820e-4339.19LINE-1 reverse transcriptase-like protein n=1 Tax=... [more]
A0A1R1XRD3_9FUNG5.540e-4341.04Transposon TX1 uncharacterized (Fragment) n=1 Tax=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 130..226
e-value: 5.9E-16
score: 58.7
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 111..226
score: 10.065
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 59..226
NoneNo IPR availablePANTHERPTHR19446:SF425coord: 59..226

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66528contigH-elongata_contig66528:2579..3256 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66528.14251.1mRNA_H-elongata_contig66528.14251.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66528 2579..3256 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66528.14251.1 ID=prot_H-elongata_contig66528.14251.1|Name=mRNA_H-elongata_contig66528.14251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
SVQHPDSKILLTEVTGIAEAWKIHYGRLAEDVTGNSKSPNKWRRWTPKSQ
RLRHITGLDLVFTWEEMVGALNRLKRHKFPGSDGIPADVYKLAIGDEISP
MGKALLAVVNLMWVGQVIPDVWMESTVVSIPKKGNLTDMNDYRGISLMGT
DLKVLMVLISLRLSAAMERERLFSPAQAGFRRQEECATQVACLLEITKHR
KIRGKPSYLAFVDLKKAYDTVPHEAL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom