prot_H-elongata_contig66478.14245.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66478.14245.1
Unique Nameprot_H-elongata_contig66478.14245.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length85
Homology
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BLAST of mRNA_H-elongata_contig66478.14245.1 vs. uniprot
Match: D8LAX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 9.700e-36
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = 0 
Query:    1 GCLQVWYVAHHVGHVMKTLRGGRLDELHRRMKRNPHVLDARVCRAVLWWNLLGEAMEVAREVEKRRSNRRENRESVVALAITQRR 85
            G  QVW+ AHHVGHV+KTLR GRLD+LHRRMKRNPHVLDARVCRAV+WW++L EAME A+E E+RR+  RE R  VV LA++QRR
Sbjct:   41 GVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRR 125
[Close]
BLAST of mRNA_H-elongata_contig66478.14245.1 vs. uniprot
Match: A0A6H5JYH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 5.980e-30
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 0 
Query:    5 VWYVAHHVGHVMKTLRGGRLDELHRRMKRNPHVLDARVCRAVLWWNLLGEAMEVAREVEKRRSNRRENRESVVALAITQRR 85
            VW+ AHHVGHV+KTLR GRLD+LHRRMKRNPHVLDARVCRAV+WW++L EAME A+E         E R  VV LA++QRR
Sbjct:   36 VWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEXXXXXXXXXECRRLVVGLAVSQRR 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66478.14245.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX3_ECTSI9.700e-3671.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYH9_9PHAE5.980e-3067.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66478contigH-elongata_contig66478:2553..3146 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66478.14245.1mRNA_H-elongata_contig66478.14245.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66478 2553..3146 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66478.14245.1 ID=prot_H-elongata_contig66478.14245.1|Name=mRNA_H-elongata_contig66478.14245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
GCLQVWYVAHHVGHVMKTLRGGRLDELHRRMKRNPHVLDARVCRAVLWWN
LLGEAMEVAREVEKRRSNRRENRESVVALAITQRR
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