prot_H-elongata_contig66236.14220.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66236.14220.1
Unique Nameprot_H-elongata_contig66236.14220.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: D8LGE7_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE7_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.510e-55
Identity = 94/121 (77.69%), Postives = 102/121 (84.30%), Query Frame = 0
Query:    1 EPDPWLSGTAPPYRTALEMSIDSARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKSYVLTCGEGKFPSRRLRQMACRQQKRHQVKPENLMDGV 121
            +PDPWL+GTAP   TAL MS D+ARLDR+SFGC +LDAAF GGV VQG+TE  GEAGAGKTQ+CLQLLLQAQL P AGGLGGKSYVLTCGEG FPSRRLRQMA   Q RH VKPE LM+GV
Sbjct:   48 KPDPWLAGTAPECTTALAMSKDAARLDRLSFGCPSLDAAFEGGVRVQGVTEIAGEAGAGKTQLCLQLLLQAQLAPEAGGLGGKSYVLTCGEGDFPSRRLRQMASTYQSRHGVKPEKLMEGV 168          
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A6H5KY82_9PHAE (RECA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY82_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 4.770e-53
Identity = 93/121 (76.86%), Postives = 101/121 (83.47%), Query Frame = 0
Query:    1 EPDPWLSGTAPPYRTALEMSIDSARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKSYVLTCGEGKFPSRRLRQMACRQQKRHQVKPENLMDGV 121
            +PDPWL+GTAP   TAL M  ++ARLDR+SFGC +LDAAF GGV VQGITE  GEAGAGKTQ+CLQLLLQAQL P AGGLGGKSYVLTCGEG FPSRRLRQMA   Q RH VKPE LM+GV
Sbjct:   48 KPDPWLAGTAPECTTALAMLKNAARLDRLSFGCPSLDAAFEGGVRVQGITEIAGEAGAGKTQLCLQLLLQAQLAPEAGGLGGKSYVLTCGEGDFPSRRLRQMASTYQSRHGVKPEKLMEGV 168          
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A835YUX7_9STRA (RECA_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.540e-17
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 0
Query:   23 SARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGK 83
            S R  R+SFGCAALDA   GG+P+ G+TE  GEAG GKTQ CLQLLLQA LP   GG+GG+
Sbjct:    3 SERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 63          
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A3Q3NDU9_9LABR (DNA repair protein n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3NDU9_9LABR)

HSP 1 Score: 82.8 bits (203), Expect = 2.310e-16
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 0
Query:   15 TALEMSIDSARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKSYVLTCGEGKFPSRRLRQMACRQQKRHQVKPENLMDGV 121
            TAL +  D + L R+S GCA LD    GG+PV G+TE +GE+GAGKTQ+ LQL L  Q P   GGL   + V  C E  FPSRRL+Q+   Q       PE+L++ +
Sbjct:   62 TALLLHDDPSSL-RLSVGCAVLDELLRGGLPVGGVTELSGESGAGKTQLALQLCLSVQYPVQQGGLDSGA-VFICTEDSFPSRRLQQLIREQSSLRSDVPESLINSI 166          
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A5H2XFN4_PRUDU (RECA_2 domain-containing protein n=3 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XFN4_PRUDU)

HSP 1 Score: 80.1 bits (196), Expect = 2.340e-16
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 0
Query:   28 RISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKS-YVLTCGEGKFPSRRLRQM 102
            ++S GC  LD    GG+P   ITE  GE+G+GKTQ+CLQL ++AQLPP  GGLGG S Y+ T  E  FP RRL+Q+
Sbjct:   15 KLSIGCPILDHCLGGGIPCNSITELVGESGSGKTQLCLQLTVRAQLPPSHGGLGGSSVYIFT--EFSFPFRRLQQL 88          
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A3Q3F241_9LABR (DNA repair protein XRCC3-like n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3F241_9LABR)

HSP 1 Score: 82.8 bits (203), Expect = 2.430e-16
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 0
Query:   15 TALEMSIDSARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKSYVLTCGEGKFPSRRLRQMACRQQKRHQVKPENLMDGV 121
            TAL +  D + L R+S GCA LD    GG+PV G+TE +GE+GAGKTQ+ LQL L  Q P   GGL   + V  C E  FPSRRL+Q+   Q       PE+L++ +
Sbjct:   62 TALLLHDDPSSL-RLSVGCAVLDELLRGGLPVGGVTELSGESGAGKTQLALQLCLSVQYPVQQGGLDSGA-VFICTEDSFPSRRLQQLIREQSSLRSDVPESLINSI 166          
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A2K3M868_TRIPR (DNA repair protein XRCC3 (Fragment) n=3 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M868_TRIPR)

HSP 1 Score: 77.4 bits (189), Expect = 2.820e-16
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 0
Query:   27 DRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKS-YVLTCGEGKFPSRRLR 100
            ++ + GC  LD   +GG+P + ITE  GE+G+GKTQICLQL+L AQLPP  GGL G S Y+ T  E  FP RRL+
Sbjct:   17 EKCTVGCPILDRNLNGGIPTKSITEVVGESGSGKTQICLQLVLSAQLPPSHGGLNGSSLYIYT--EYPFPIRRLK 89          
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A5H2YB73_PRUDU (RECA_2 domain-containing protein n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YB73_PRUDU)

HSP 1 Score: 80.1 bits (196), Expect = 3.680e-16
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 0
Query:   28 RISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKS-YVLTCGEGKFPSRRLRQM 102
            ++S GC  LD    GG+P   ITE  GE+G+GKTQ+CLQL ++AQLPP  GGLGG S Y+ T  E  FP RRL+Q+
Sbjct:   15 KLSIGCPILDHCLGGGIPCNSITELVGESGSGKTQLCLQLTVRAQLPPSHGGLGGSSVYIFT--EFSFPFRRLQQL 88          
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A8C4CM17_9TELE (DNA repair protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4CM17_9TELE)

HSP 1 Score: 81.6 bits (200), Expect = 8.140e-16
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 0
Query:   10 APPYRTALEMSIDSARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLG-GKSYVLTCGEGKFPSRRLRQMACRQQKRHQVKPENLMDGV 121
            A P RTAL++  +S   +++S  C  LDA  HGG+P+ GITE +GE+GAGKTQ+ LQL L  Q P   GGLG G  Y+  C E  FP +RLRQ+  +Q +     P+ L+  +
Sbjct:   60 AAPVRTALDVR-NSEPGEKLSLACPLLDALLHGGLPLCGITELSGESGAGKTQLGLQLCLSVQYPAEWGGLGSGAVYI--CTEDAFPIKRLRQLITQQPRLRPDIPQALVHSI 169          
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A251QTB2_PRUPE (RECA_2 domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=A0A251QTB2_PRUPE)

HSP 1 Score: 80.5 bits (197), Expect = 1.220e-15
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 0
Query:   28 RISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKS-YVLTCGEGKFPSRRLRQM 102
            ++S GC  LD    GG+P + ITE  GE+G+GKTQ+CLQL ++AQLPP  GGLGG S Y+ T  E  FP RRL+Q+
Sbjct:   15 KLSIGCPILDHCLGGGIPCKSITELVGESGSGKTQLCLQLTVRAQLPPSHGGLGGSSVYIFT--EFSFPFRRLQQL 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGE7_ECTSI1.510e-5577.69RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KY82_9PHAE4.770e-5376.86RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YUX7_9STRA3.540e-1765.57RECA_2 domain-containing protein n=1 Tax=Tribonema... [more]
A0A3Q3NDU9_9LABR2.310e-1646.73DNA repair protein n=2 Tax=Labrus bergylta TaxID=5... [more]
A0A5H2XFN4_PRUDU2.340e-1655.26RECA_2 domain-containing protein n=3 Tax=Prunus du... [more]
A0A3Q3F241_9LABR2.430e-1646.73DNA repair protein XRCC3-like n=1 Tax=Labrus bergy... [more]
A0A2K3M868_TRIPR2.820e-1654.67DNA repair protein XRCC3 (Fragment) n=3 Tax=Trifol... [more]
A0A5H2YB73_PRUDU3.680e-1655.26RECA_2 domain-containing protein n=2 Tax=Prunus du... [more]
A0A8C4CM17_9TELE8.140e-1645.13DNA repair protein n=1 Tax=Denticeps clupeoides Ta... [more]
A0A251QTB2_PRUPE1.220e-1555.26RECA_2 domain-containing protein n=1 Tax=Prunus pe... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 15..119
e-value: 7.1E-19
score: 68.1
NoneNo IPR availableGENE3D3.40.50.300coord: 12..121
e-value: 6.7E-25
score: 90.0
NoneNo IPR availablePANTHERPTHR46487FAMILY NOT NAMEDcoord: 22..116
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainPROSITEPS50162RECA_2coord: 25..121
score: 22.577
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 26..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66236contigH-elongata_contig66236:2..1379 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66236.14220.1mRNA_H-elongata_contig66236.14220.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66236 2..1379 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66236.14220.1 ID=prot_H-elongata_contig66236.14220.1|Name=mRNA_H-elongata_contig66236.14220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
EPDPWLSGTAPPYRTALEMSIDSARLDRISFGCAALDAAFHGGVPVQGIT
EATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKSYVLTCGEGKFPSRRLR
QMACRQQKRHQVKPENLMDGV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR020588RecA_ATP-bd
IPR027417P-loop_NTPase