prot_H-elongata_contig66183.14212.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66183.14212.1
Unique Nameprot_H-elongata_contig66183.14212.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length259
Homology
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 3.200e-93
Identity = 178/278 (64.03%), Postives = 192/278 (69.06%), Query Frame = 0
Query:    1 MDTAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLF-------------GAD------LSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVS-LESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 258
            MDTAV ERL+DTY RMT D DSYVYLAAVQGLAALADALPGW IPRLVG+F             G D      L LSQRLKIGEAV+LSARRCGD MPK+AH FVNAFVVAARER++                                    S LES+ER HFRASCLSNLAEVCQLLRWSLGRFS D+VDL  G+L  ET  SEE+TL RRGA+FLL ++LRGAGGDVLE+VPA  LR AYRALK   G DRDE TRSHAR GL YLD AIRGQLF
Sbjct: 1148 MDTAVAERLIDTYTRMTGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTATAAAAAHGSAPGVDAAAATPLPLSQRLKIGEAVLLSARRCGDAMPKHAHLFVNAFVVAARERSSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLESKERCHFRASCLSNLAEVCQLLRWSLGRFSYDVVDLAAGVLSTETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRLAYRALKRAAGSDRDEITRSHARNGLGYLDAAIRGQLF 1425          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 6.330e-92
Identity = 183/316 (57.91%), Postives = 201/316 (63.61%), Query Frame = 0
Query:    1 MDTAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLFGA----------------------------DLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGY-----------SGRAGCDSGSDGSVDRG-------------------VREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 258
            MDTAV ERL+DTYARM  D DSYVYLAAVQGLAALADALPGW IPRLVG+F A                             L LSQRLKIGEAV+LSARRCGD MPKYAH FVNAFVVAARER++                      G AG  S    +V+                     V ++  +  SLES+ERYHFRASCLSNLAEVCQLLRWSLGRFS D+VDL  G+L  ET  SEE+TL RRGA+FLL ++LRGAGGDVLE+VPA  LR AYRALK     DRDE TRSHAR GL  LD AIRGQLF
Sbjct: 1157 MDTAVAERLMDTYARMAGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTAAAAXXXXXXXXXXXXXXXSPAXXXXXATPLPLSQRLKIGEAVLLSARRCGDAMPKYAHLFVNAFVVAARERSSDGNXXXXXXXXXXXXXXXXXPGGDAGSASLGSAAVNXXXXXXXXXXXXXXXXXXAAQVNQKPSSSSSLESKERYHFRASCLSNLAEVCQLLRWSLGRFSCDVVDLAAGVLSTETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGCLDAAIRGQLF 1472          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.390e-58
Identity = 125/264 (47.35%), Postives = 160/264 (60.61%), Query Frame = 0
Query:    5 VLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLF------GAD-----LSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQL 257
            VL++ +D Y  M  D +SYVYLAAVQGL+ L+D  PG+ IP LV +F       AD     L+L+QRLK+GEAV+ +ARRCG+  PKYA  FV AFVVAARER                G DSG                 S+E+RER HFRASCLSNLAEVC LLRWSL  +++D+VDL +G L +ET   EEAT VRR + +LLS++L G G D   I+P  L++  YRAL++      D   R HA+ GL+ +D  +  QL
Sbjct:  851 VLDKFVDIYVLMAQDEESYVYLAAVQGLSVLSDVSPGYVIPTLVSIFCGARAGSADHSAPPLTLAQRLKVGEAVMFAARRCGEAAPKYAQHFVGAFVVAARERV---------------GGDSG-----------------SVETRERIHFRASCLSNLAEVCALLRWSLRPYARDVVDLALGALTLETGAGEEATHVRRASAYLLSRILAGTGSDAATIMPD-LIKPVYRALRIVASTVSDGVARFHAKAGLAEIDAIMMQQL 1081          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A7S3YE87_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE87_HETAK)

HSP 1 Score: 151 bits (381), Expect = 1.140e-40
Identity = 94/267 (35.21%), Postives = 143/267 (53.56%), Query Frame = 0
Query:    9 LLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLF--------------------GADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRG 255
            LLD Y  M AD +SYVYLAAVQGL+ LA  LP   +P LV  F                     +++S +QR+K+GEA++ +AR+CG  + KY+ +F+ AF++ AR R+A                                  +V  +S +  +FR+SCLSNLAEVC LL+WSL R++QDI DL +GIL ME + S+EA   RRG+ +++ ++L          +    +++ YR LK+    D D   + +A++ +  +DV +RG
Sbjct:   11 LLDVYGEMLADEESYVYLAAVQGLSVLATNLPAMVLPFLVEKFTGKETTIKKEAGQKEPMRSTSSEMSWAQRVKVGEALMCAARKCGASISKYSQYFMRAFILGARMRSA----------------------------------DVEDDS-DWVNFRSSCLSNLAEVCGLLKWSLDRYAQDIFDLALGILQMEGTNSQEALAARRGSLYIMYKILNSLDSTNFAGIIGSHIKSMYRRLKIVAKSDCDSLCKHNAQMCIDVIDVFMRG 242          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A1V9ZHW9_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHW9_9STRA)

HSP 1 Score: 151 bits (382), Expect = 5.600e-38
Identity = 104/254 (40.94%), Postives = 136/254 (53.54%), Query Frame = 0
Query:    9 LLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLFGADL---SLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLFQ 259
            L+  +     DA+SYVYLA++Q LA+LAD  P   IP L+    AD    S+ QR+K+ EA++ +ARRCG+V+P YA  FV A++ A R  T                                      +ES E   FRASCLSNLAEVC LLRW++  F  D++    G+L +E  RS+    +RRGA F+L QLL   G +V EI  A  +   YR LKL V  D D  +R HA   LS LDV +RG+LFQ
Sbjct:  734 LMQLFLAQLLDAESYVYLASIQALASLADMHPATAIPLLLAT-AADTTQHSIDQRIKLSEALMFAARRCGEVLPAYARGFVYAYLHAIRTPTR------------------------------------DVESLEDATFRASCLSNLAEVCGLLRWAIHPFLADVLLCVKGVLEVERGRSDAHVALRRGAVFVLHQLLTLMGREVFEIA-AEHMTPIYRMLKL-VATDSDRVSRFHAEQALSELDVLMRGELFQ 948          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A6G0XAH2_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAH2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 6.850e-36
Identity = 94/255 (36.86%), Postives = 133/255 (52.16%), Query Frame = 0
Query:    6 LERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLV-GLFGADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLFQ 259
            ++ L   + R   D DSYV+LAAVQ LA L D      IP L+  +     SL +R+K+ EA+V +ARRCG+++PKY+  FV A++   R+  +                             ++   E +        FRASCLSNLAEVC LL+WS+  +  D+V    GIL +    ++  T +RRGA FLL  +L+  GGD+ EIVP   +   YR LKL    ++D   R HA   L+ LD  +RG+LFQ
Sbjct:  707 IDLLFPLFVRHLEDNDSYVFLAAVQALAGLGDKYADKSIPMLLDAVKDKKYSLEKRIKLSEALVFTARRCGEIIPKYSQGFVYAYLHCIRKSDS-----------------------------QQDIVEAT--------FRASCLSNLAEVCGLLKWSIQTYIADVVGCVKGILEIGRQNTDAHTALRRGAIFLLFHMLQMMGGDIFEIVP-EYMSPIYRLLKLEASTEKDPVCRYHADQSLALLDTLMRGELFQ 923          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A6A5B0I4_9STRA (RTP1_C1 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B0I4_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.450e-35
Identity = 95/255 (37.25%), Postives = 126/255 (49.41%), Query Frame = 0
Query:    6 LERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLFGADL--SLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 258
            +E L+       ADADSYVYLAAVQ LA L D      IP L+     D   S+ QR+K+ EA++ +ARRCGDVMPKY   FV  ++   R RT  +                                E +L        RASCLSNLAEVC LL W++  +  D+V    GIL  E   ++    +RRGA F+L  +L+  G D+LE VP  +    YR LK+    ++D   R HA   +  LD  +RG+LF
Sbjct:  169 VEALVALCVHHLADADSYVYLAAVQALAGLGDVYADKTIPLLLDALAQDATYSVEQRIKLSEALLFTARRCGDVMPKYGRAFVFGYLRCIRSRTLPNDA--------------------------NDIEEATL--------RASCLSNLAEVCGLLHWAISPYITDVVGCVRGILETERLATDAHIALRRGAVFVLYNMLQLMGRDILEAVPDAMT-PIYRLLKMEASTEKDAVCRFHAENSVKALDTIMRGELF 388          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A485LCX3_9STRA (Aste57867_18971 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCX3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.890e-35
Identity = 93/242 (38.43%), Postives = 127/242 (52.48%), Query Frame = 0
Query:   19 DADSYVYLAAVQGLAALADALPGWCIPRLVGLF--GADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 258
            DADSYV+LAAVQ LA L D      IP L+     GA  SL QR+K+ EA++ +ARRCG ++PKY+H FV  ++   R   +                             +    + +        FRASCLSNLAEVC LL+W++  +  D+V    GIL +E   ++  T +RRGA FLL  +L+  G D+ EIVP  +    YR LKL    + D+  R HA+  LS LD  +RG+LF
Sbjct:  712 DADSYVFLAAVQTLAGLGDVHADVTIPMLLAALQDGATYSLEQRIKLSEALLFTARRCGAMVPKYSHGFVYGYLKCIRSTAS-----------------------------QPDVVDAT--------FRASCLSNLAEVCGLLQWAIQPYIADVVGCVKGILEIERQPTDAHTALRRGAVFLLYHMLQLMGRDMFEIVPEHMT-PIYRLLKLEASTETDDVCRFHAQKSLSELDALMRGELF 915          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: K3X8E9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8E9_GLOUD)

HSP 1 Score: 141 bits (356), Expect = 1.530e-34
Identity = 100/260 (38.46%), Postives = 141/260 (54.23%), Query Frame = 0
Query:    3 TAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVG-LFGADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARE-RTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREE--GFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 258
            T  +++L+  +     D +SYV+LAAVQGL+ L+DA P   I  LV  L   D SL +R+K+ EA++ +A+RCG+ +PKYA  FV A++   R  R    R    K +      DS  D   +    E   G     +E+      RASCLSNLAEVC LL+WSL  F  D++    GIL +E   +E    VRRGA FLL  L++  G  +LE++P +L +  Y  LK+    D+D     HAR  L  L+  +R +LF
Sbjct:  772 TPRIQQLVQIFLTHLEDGESYVFLAAVQGLSTLSDAHPDVAISLLVSALRDRDNSLEKRIKLSEALLFTAKRCGETLPKYAKVFVYAYLDCIRPPRGQSTRRTPSKRFQLIQEIDSSEDKEPEEASVETDAGGDNTLVEAT----LRASCLSNLAEVCVLLQWSLQPFLVDVMTCVFGILQLELDATESVVAVRRGAAFLLKYLVQLMGWKMLEVMPDQL-KPMYHMLKVVERTDKDSVVVFHARKALEALNDVMRTELF 1026          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A024U9C1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9C1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.750e-34
Identity = 92/241 (38.17%), Postives = 124/241 (51.45%), Query Frame = 0
Query:   19 DADSYVYLAAVQGLAALADALPGWCIPRLV-GLFGADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 258
            DADSYVYLAAVQ LA L D      IP L+  +    +S+ QR+K+GEA+V +ARRCG +MPKY   FV+ ++                      GC           +R         +S E   FRASCLSNLAEVC LL+W++  +  D+V    GIL  E   ++    +RRGA F+L  +L+  G D+LE +P  +    YR LK     + D   R HA  G+  LD  +RG+LF
Sbjct:  731 DADSYVYLAAVQALAGLGDVFADKTIPLLLDAVQDVKVSIEQRIKVGEALVFTARRCGAMMPKYGRAFVHGYL----------------------GC-----------IRRHPQATKMQDSLEEATFRASCLSNLAEVCGLLQWAIHPYITDVVACVRGILDTERLTTDAHIALRRGAVFVLYHMLQLFGRDILEAIPDAMT-PIYRLLKHEAASETDPVCRFHAENGVKELDTIMRGELF 937          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPL2_9PHAE3.200e-9364.03RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FHX3_ECTSI6.330e-9257.91RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YW23_9STRA1.390e-5847.35RTP1_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3YE87_HETAK1.140e-4035.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1V9ZHW9_9STRA5.600e-3840.94RTP1_C1 domain-containing protein n=1 Tax=Achlya h... [more]
A0A6G0XAH2_9STRA6.850e-3636.86RTP1_C1 domain-containing protein n=1 Tax=Aphanomy... [more]
A0A6A5B0I4_9STRA1.450e-3537.25RTP1_C1 domain-containing protein n=2 Tax=Aphanomy... [more]
A0A485LCX3_9STRA5.890e-3538.43Aste57867_18971 protein n=1 Tax=Aphanomyces stella... [more]
K3X8E9_GLOUD1.530e-3438.46Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024U9C1_9STRA3.750e-3438.17Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019451RNA polymerase II assembly factor Rtp1, C-terminalPFAMPF10363RTP1_C1coord: 5..76
e-value: 6.7E-15
score: 55.2
IPR039600TANGO6/Rtp1PANTHERPTHR20959UNCHARACTERIZEDcoord: 6..258
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 5..249

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66183contigH-elongata_contig66183:427..2164 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66183.14212.1mRNA_H-elongata_contig66183.14212.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66183 427..2164 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66183.14212.1 ID=prot_H-elongata_contig66183.14212.1|Name=mRNA_H-elongata_contig66183.14212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
MDTAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGL
FGADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYD
RTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLS
NLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLS
QLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLD
VAIRGQLFQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019451Rtp1_C1
IPR039600TANGO6/Rtp1
IPR016024ARM-type_fold