prot_H-elongata_contig65947.14180.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig65947.14180.1
Unique Nameprot_H-elongata_contig65947.14180.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length325
Homology
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BLAST of mRNA_H-elongata_contig65947.14180.1 vs. uniprot
Match: A0A6H5KYC8_9PHAE (RNase III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYC8_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 3.290e-83
Identity = 168/317 (53.00%), Postives = 206/317 (64.98%), Query Frame = 0 
Query:    1 PHLRTGQGQPVRGTKILADCFEAVLGAVYVDAGGCSDLEPIHGILARVIPSYEREHG----RRPPQNFHPSEHXXXXXXXXXXXNIADAHAPPESPRPRAKEATKLMNLAHRITQMARQGMTANQSGDLESNGAARGQVSSPPRMS-----AQPSPQEVVREFDERLRSFERNSLRRGSLSYATSAFVEDFGAGVANFFQDAASD-PDKSGLLDDVLAGSSMLRKHFVDAPPGAERVVMEVVLVSSEVRLQYFSAVEHLMINVLR-QGGDRERS---ALRLIRSAPDGGATVALLSNLIVDSATSLLFSSRQRAALS 303
            P+LR G GQPV GTKILADCFEAVLGAVYVDAGGCSDLEPIH ILARVIPSY+ +      R+PP   HP  H               A  PP  P P A+   KLMNLAHR+TQ+A++     + G   +    +G   + P +S     +   P EVVREFD RLR F+ N LR G+LS+++ AF   FG   A FF   A+  P++  LLD VL GSSMLRKHF  APPGAERVVMEVVLV SE+RLQ F+ VE L+ NVL+ QGG  E +    LRLIRSAP G AT+A LS+++ ++AT+LL ++ QRA +S
Sbjct:  108 PYLRIGHGQPVGGTKILADCFEAVLGAVYVDAGGCSDLEPIHAILARVIPSYKHDRRLQVPRQPPHPRHPHSHPHG------------AMEPP--PGPPAEGPRKLMNLAHRLTQIAKRDADRVEGGGGRAAQPMQGDAPASPPLSRAANGSDRDPLEVVREFDGRLRDFQGNVLRGGALSFSSRAFAGAFGEDEARFFSAVATGCPERCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVEFLLNNVLQPQGGSGEPADNPVLRLIRSAPHGDATIAFLSSIVTETATNLLLNAHQRATIS 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65947.14180.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYC8_9PHAE3.290e-8353.00RNase III domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036389Ribonuclease III, endonuclease domain superfamilyGENE3D1.10.1520.10coord: 1..51
e-value: 8.7E-6
score: 27.4
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILY69065RNase III domain-likecoord: 3..50
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 1..33
score: 11.036

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65947contigH-elongata_contig65947:303..2601 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65947.14180.1mRNA_H-elongata_contig65947.14180.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig65947 303..2601 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig65947.14180.1 ID=prot_H-elongata_contig65947.14180.1|Name=mRNA_H-elongata_contig65947.14180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=325bp
PHLRTGQGQPVRGTKILADCFEAVLGAVYVDAGGCSDLEPIHGILARVIP
SYEREHGRRPPQNFHPSEHHHHRHHHHPHHNIADAHAPPESPRPRAKEAT
KLMNLAHRITQMARQGMTANQSGDLESNGAARGQVSSPPRMSAQPSPQEV
VREFDERLRSFERNSLRRGSLSYATSAFVEDFGAGVANFFQDAASDPDKS
GLLDDVLAGSSMLRKHFVDAPPGAERVVMEVVLVSSEVRLQYFSAVEHLM
INVLRQGGDRERSALRLIRSAPDGGATVALLSNLIVDSATSLLFSSRQRA
ALSPAQPPSHTHVPIPSPASQPPPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036389RNase_III_sf
IPR000999RNase_III_dom