prot_H-elongata_contig65415.14123.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig65415.14123.1
Unique Nameprot_H-elongata_contig65415.14123.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length116
Homology
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BLAST of mRNA_H-elongata_contig65415.14123.1 vs. uniprot
Match: D7FVA4_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.230e-36
Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 0 
Query:    1 MGSFDTVHCFSNEPYECEMLFDLASVTYTGDIKCQICNLDSERQYVGLDDETIGGDDDXXXXXXXXXXDSSEGIVIGLSLALGVTLVVIGGLAVWKFRVRRNARRLMDDMGDGDI 115
            MG F+ ++CF+NEPYECE ++D + + ++G+ KCQIC+++ ERQ  G DD+ I   D             ++GIVIGLSLALG+TLVVIG LAVWKFRVR+NARRLM+DMG+GD+
Sbjct:  372 MGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLI---DASERSIDGDSSSDNQGIVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL 483
[Close]
BLAST of mRNA_H-elongata_contig65415.14123.1 vs. uniprot
Match: D7FV99_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.580e-15
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0 
Query:    1 MGSFDTVHCFSNEPYECEMLFDLASVTYTGDIKCQICNLDSERQYVGLDDETIGGDDDXXXXXXXXXXDSSEGIVIGLSLALGVTLVVIGGLAV 94
            MG FD ++CF+NEPYECE ++D + + + G+ KCQIC++D  +Q  G D +  G  D           DS + I+IGLS AL + +++  G  V
Sbjct:  372 MGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLTGSIDQSSSSNSW---DSKDYIIIGLSAALALCIILAIGFLV 462
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65415.14123.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVA4_ECTSI3.230e-3655.65Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
D7FV99_ECTSI6.580e-1539.36Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..73
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 96..115
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 74..95
NoneNo IPR availableTMHMMTMhelixcoord: 73..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65415contigH-elongata_contig65415:2117..2898 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65415.14123.1mRNA_H-elongata_contig65415.14123.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig65415 163..2913 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig65415.14123.1 ID=prot_H-elongata_contig65415.14123.1|Name=mRNA_H-elongata_contig65415.14123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MGSFDTVHCFSNEPYECEMLFDLASVTYTGDIKCQICNLDSERQYVGLDD
ETIGGDDDGDSSSSSRSSDSSEGIVIGLSLALGVTLVVIGGLAVWKFRVR
RNARRLMDDMGDGDI*
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