prot_H-elongata_contig65188.14109.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig65188.14109.1
Unique Nameprot_H-elongata_contig65188.14109.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length133
Homology
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BLAST of mRNA_H-elongata_contig65188.14109.1 vs. uniprot
Match: D8LSQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ0_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.160e-53
Identity = 93/135 (68.89%), Postives = 109/135 (80.74%), Query Frame = 0 
Query:    1 MCNRIKNGG-HQT-SYGSLDGATGERILQRLVGMRALTPTILVAFRGCPVAALSMDNNPRATNALMVELGRKVSLTSLSVVNNDMITVEGVECLVRLRALAVLDISGCRATNGWLKAIAKLPSLERLILRGCSKV 133
            +C RI+ GG HQ  SYG LD ATG RILQRL  +RALTP +L AFRGCPVA LS+D NPR TNAL+ ELGRKVS+ SLS+ +ND +T+EG+E L  LRALA LDISGC+ TNGWLK IAKLP+LE L+LRGC+KV
Sbjct:    4 ICQRIRGGGQHQAVSYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLLLRGCTKV 138
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BLAST of mRNA_H-elongata_contig65188.14109.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.550e-51
Identity = 93/135 (68.89%), Postives = 109/135 (80.74%), Query Frame = 0 
Query:    1 MCNRIKNGG-HQT-SYGSLDGATGERILQRLVGMRALTPTILVAFRGCPVAALSMDNNPRATNALMVELGRKVSLTSLSVVNNDMITVEGVECLVRLRALAVLDISGCRATNGWLKAIAKLPSLERLILRGCSKV 133
            +C RI+  G HQ  SYG LDGATG RILQRL  +RALTP +L AFRGCPVA LS+D NPR TNAL+ ELGRKVS+ SLS+ +ND +T+EG+E L  LRALA LDISGC+ TNGWLK IAKLP+LE L+LRGC+KV
Sbjct:  562 ICQRIRGSGQHQAVSYGGLDGATGTRILQRLANLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKV 696
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65188.14109.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSQ0_ECTSI1.160e-5368.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KH38_9PHAE1.550e-5168.89UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 24..133
e-value: 6.3E-11
score: 43.7
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 50..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65188contigH-elongata_contig65188:968..3180 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65188.14109.1mRNA_H-elongata_contig65188.14109.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig65188 941..3180 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig65188.14109.1 ID=prot_H-elongata_contig65188.14109.1|Name=mRNA_H-elongata_contig65188.14109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MCNRIKNGGHQTSYGSLDGATGERILQRLVGMRALTPTILVAFRGCPVAA
LSMDNNPRATNALMVELGRKVSLTSLSVVNNDMITVEGVECLVRLRALAV
LDISGCRATNGWLKAIAKLPSLERLILRGCSKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf