prot_H-elongata_contig65013.14090.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig65013.14090.1
Unique Nameprot_H-elongata_contig65013.14090.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length149
Homology
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BLAST of mRNA_H-elongata_contig65013.14090.1 vs. uniprot
Match: D8LN85_ECTSI (Histone deacetylase superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN85_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 8.970e-52
Identity = 84/114 (73.68%), Postives = 92/114 (80.70%), Query Frame = 0 
Query:   31 DREAEEADADFHKMHMLNYRSLEFESEVLECPWECSGCLRRSTSCGCPEGFPAWLDSDAGQARQAQLGKYTCLGGPAECSFCRRGPGHLILLGEWARDMQAIRDGNMPPSSHAL 144
            D EAEEAD DF KMH  NYR+++ E E+LECPW C GCLRRSTSCGCPEGFPAWLDSD GQARQ+   +Y C  G A CSFCRRGPGHLILLGEWARD+QAI +G  PPSS AL
Sbjct:  140 DAEAEEADPDFQKMHKFNYRAVDLEGEILECPWVCRGCLRRSTSCGCPEGFPAWLDSDVGQARQSLFRRYNCRAGAAGCSFCRRGPGHLILLGEWARDVQAISEGIPPPSSRAL 253
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BLAST of mRNA_H-elongata_contig65013.14090.1 vs. uniprot
Match: A0A6H5JK20_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK20_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 9.450e-13
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 0 
Query:   98 GKYTCLGGPAECSFCRRGPGHLILLGEWARDMQAIRDGNMPPSSHAL 144
            G Y C  G A CSFCRRGPGHLILLGEWARD++AI +G  PPS+ AL
Sbjct:   12 GMYNCRAGAAGCSFCRRGPGHLILLGEWARDVKAISEGIPPPSTRAL 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65013.14090.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN85_ECTSI8.970e-5273.68Histone deacetylase superfamily n=1 Tax=Ectocarpus... [more]
A0A6H5JK20_9PHAE9.450e-1370.21Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65013contigH-elongata_contig65013:744..2624 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65013.14090.1mRNA_H-elongata_contig65013.14090.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig65013 743..2624 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig65013.14090.1 ID=prot_H-elongata_contig65013.14090.1|Name=mRNA_H-elongata_contig65013.14090.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
GREERGRGGGGEGVLIGIPEDSVDDVLSQADREAEEADADFHKMHMLNYR
SLEFESEVLECPWECSGCLRRSTSCGCPEGFPAWLDSDAGQARQAQLGKY
TCLGGPAECSFCRRGPGHLILLGEWARDMQAIRDGNMPPSSHALPFPPQ
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