prot_H-elongata_contig6493.14079.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6493.14079.1
Unique Nameprot_H-elongata_contig6493.14079.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length841
Homology
BLAST of mRNA_H-elongata_contig6493.14079.1 vs. uniprot
Match: D8LLY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY3_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 1.260e-116
Identity = 368/707 (52.05%), Postives = 432/707 (61.10%), Query Frame = 0
Query:   94 MIDFSYSYIVPGHLPDP------------AELHPAIEGDDTTPSMSLSLRECSLGDAGVSELARSPWVCGDMAARALSLRHNQITAIGVRALFEALRSS--SADRMSCLELDFNPLGDAGTQPLPAYLKQRASRGGGGLEELSLRFCGIGPAGCRYISSALAKSATSAAASENIDSEGRSDSRGGRVSLGVLGHAQRHEGPSDVGTKRTMPEAWVDAE----KAVDGESSLVGPPSCGVRRLLLTGN-QLGDGGARSLASLLAKDSSVEVLDLTRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLITNRGTLETLELAGNRIGDSGALALARGLTGTD--GGGRVGGLRREKTSTL---GRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRVVLEELELSGNPLTLSAAQAAEASKKNAFLYKSAGDALSSLLNQFVDESYY----------------RPGASPSSPGGVGERDDGKFLRCAVAAFGVSLRGEAC-----------------SLKALGLARTGMTDSDALKLAAALGERSADSPLAHVEVFLNGLGVEAMEAVRLAVESPTGPEHCSDPDEPYRFAEGRRAWARNRGNGR--------------SARGT-RPS-RSRRKSYVRGDGNDERAVLGEMQNYAPVGGNVELELFGRKVASFRQERVTGSGLEVKVFGKRVRFER 727
            M+DFS+S + P  L D                HP    +   P  +LSLRECSLGD GV+E+ARSPWV G    RALSLR NQ+TA GVRAL ++LRS+  S DR++CLELDFNP+GDAG QPLPAYLK+RA+RGGGGLEELSLRFC IGPAG  Y+SSAL KSA +A  + N D+                 ++   E P+  G                 K    E  L  P + G+RRLLLTGN +LGD GA++LAS L KD+S++VLDLTRC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         LE LEL GN +GD+GA+ALA GL G +  GG R  G  ++  S+    G R  XXXXXXXXXXXXXXXXXXXXXXXXXX  G VVLEELEL+GN LTLSA+QAA A  K++ LYKSAG ALSSLL  FVDESYY                 P +  +  GGV ER     LRCAVA  G +L G+                   SLKA+GLARTG+T+ DA +LAAAL  R  DSPL  VEV LNGL V+A EA+RLAVESPT P      D    F +      +N G GR              +A G   P  RSRR +       +  A   E+  Y P GG+VEL LFG+K ASF+Q   +G  L+V+VFGKRVRFER
Sbjct:   37 MLDFSFSPLGPRGLQDTDIDAAGVVEEGQQHRHP----NTNPPPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSATDSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAG--YLSSALLKSAAAAKIAANDDA-----------------NSPASEAPTTAGXXXXXXXXXXXXXXXXXKKGGAEVVLPPPVASGIRRLLLTGNDRLGDAGAKALASALKKDNSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGSSALECLELQGNHVGDAGAVALADGLVGGNNRGGRRXXGASKQGISSRRGPGLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGGVVLEELELAGNALTLSASQAA-AQAKSSSLYKSAGGALSSLLTTFVDESYYGGNSNNRGSVQDASALTPPSLGNPAGGVAERP----LRCAVAELGEALAGQGARGXXXXXXXXXXXXGCPSLKAVGLARTGLTERDAARLAAALRARPVDSPLEEVEVGLNGLSVKAAEAIRLAVESPTAPH-----DRSSSFVDD---LEKNGGRGRXXXXXXXXXXRHDPAAPGVDEPGLRSRRGTATAAPAEERSARGAEVGEYVPPGGSVELGLFGKKFASFQQAGGSGRELDVEVFGKRVRFER 707          
BLAST of mRNA_H-elongata_contig6493.14079.1 vs. uniprot
Match: A0A6H5JEB8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB8_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 2.980e-73
Identity = 245/424 (57.78%), Postives = 286/424 (67.45%), Query Frame = 0
Query:   94 MIDFSYSYIVPGHLPDPAELHPA---IEG------DDTTPSMSLSLRECSLGDAGVSELARSPWVCGDMAARALSLRHNQITAIGVRALFEALRSS--SADRMSCLELDFNPLGDAGTQPLPAYLKQRASRGGGGLEELSLRFCGIGPAGCRYISSALAKSATSAAASENIDSEGRSDSRGGRVSLGVLGHAQRHEGPSDVGTKRTMPEAWVDAEKAVDGESSLVGPPSCGVRRLLLTGN-QLGDGGARSLASLLAKDSSVEVLDLTRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLITNRGTLETLELAGNRIGDSGALALARGLTG-TDGGGRVGGLRREKTSTLGRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXSGR---VVLEELELSGNPLTLSAAQAAEASK 501
            M+DFS+S + P  L D  ++  A    EG      D  +P  +LSLRECSLGD GV+E+ARSPWV G    RALSLR NQ+TA GVRAL ++LRS+  S DR++CLELDFNP+GDAG QPLPAYLK+RA+RGGGGLEELSLRFC IGPAGCRY+SSAL KSA +A  S N D    +                        G +  +P                  P + G+RRLLLTGN ++GD GA++LAS L KDSS++VLDLTRC XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LL      LE LEL GN +GD+GA+ALA GL G +  GGR      ++ S+  R  G    XXXXXXXXXXXXXXXXXXXXXX  G    VVLEELEL+GN LTLSA+QAA  +K
Sbjct:   90 MLDFSFSPLGPRGLQD-TDIDAAGVVEEGQHHRYPDTNSPPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSAADSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAGCRYLSSALLKSAAAAKISANDDPNNSAXXXXXXXXXXXXXXXXXXXXXXKGGAEFGLPP-----------------PAASGIRRLLLTGNDRIGDAGAKALASALKKDSSLQVLDLTRCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHAGSSALECLELQGNHVGDAGAVALADGLVGGSKRGGRXXXXXAKQGSSSRRGPGLRSLXXXXXXXXXXXXXXXXXXXXXXKGGXXGGVVLEELELAGNALTLSASQAAAQAK 495          
BLAST of mRNA_H-elongata_contig6493.14079.1 vs. uniprot
Match: A0A835Z931_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z931_9STRA)

HSP 1 Score: 108 bits (271), Expect = 8.020e-21
Identity = 71/156 (45.51%), Postives = 93/156 (59.62%), Query Frame = 0
Query:   92 GGMIDFSYSYIVPGHLPDPAELHPAIEGDDTTPSMSLSLRECSLGDAGVSELARSPWVCGDMAARALSLRHNQITAIGVRALFEALRSSSADRMSCLELDFNPLGDAGTQPLPAYLKQRASRGGGGLEELSLRFCGIGPAGCRYISSALAKSATSA 247
            G  ID S+S++ P      +E+   +      PS  L L+ECSLGD G  ++  S  V        LSLRHN I  +G R+L + LR++  DR+  L LDFN +GDAG QPLPA LK  ++   G LE LSLRFCGI  AGCR I+SAL+K+  +A
Sbjct:   52 GQFIDLSFSHVGPVGA---SEVLSGLSEASAAPS-GLLLQECSLGDRGALDVVSSTLVSSPEGVGVLSLRHNHIGRVGSRSLLQHLRTAP-DRLQTLVLDFNLIGDAGLQPLPALLKDSSN---GRLESLSLRFCGISAAGCRSIASALSKAQVNA 199          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6493.14079.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLY3_ECTSI1.260e-11652.05Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JEB8_9PHAE2.980e-7357.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835Z931_9STRA8.020e-2145.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 311..338
e-value: 0.16
score: 21.0
coord: 445..472
e-value: 0.024
score: 23.8
coord: 367..394
e-value: 0.29
score: 20.2
coord: 152..179
e-value: 0.95
score: 17.3
coord: 215..242
e-value: 0.14
score: 21.3
coord: 396..423
e-value: 0.021
score: 24.0
coord: 339..366
e-value: 0.0038
score: 26.5
coord: 182..209
e-value: 110.0
score: 2.7
coord: 476..503
e-value: 81.0
score: 3.7
coord: 563..590
e-value: 2.5
score: 14.4
NoneNo IPR availablePANTHERPTHR24114FAMILY NOT NAMEDcoord: 126..242
coord: 187..421
coord: 319..496
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..840
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 127..496
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 125..252
e-value: 4.3E-18
score: 67.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 299..425
e-value: 4.9E-30
score: 106.0
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 366..389
e-value: 0.46
score: 10.7
coord: 314..333
e-value: 0.66
score: 10.2
coord: 398..418
e-value: 4.0E-4
score: 20.2
coord: 218..236
e-value: 1.1
score: 9.5
coord: 339..361
e-value: 2.4E-4
score: 20.9
coord: 156..173
e-value: 0.54
score: 10.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6493contigH-elongata_contig6493:2833..9463 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6493.14079.1mRNA_H-elongata_contig6493.14079.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6493 1617..9471 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6493.14079.1 ID=prot_H-elongata_contig6493.14079.1|Name=mRNA_H-elongata_contig6493.14079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=841bp
MPAMASKRLRRSDGVLPITTLTCLLLVELFYVCLGYAEIGGNLDDTVTPA
SGPQAVSPTIQLNNDRTNQSDVDFSTQDNSSGGAGAVMVEQGGMIDFSYS
YIVPGHLPDPAELHPAIEGDDTTPSMSLSLRECSLGDAGVSELARSPWVC
GDMAARALSLRHNQITAIGVRALFEALRSSSADRMSCLELDFNPLGDAGT
QPLPAYLKQRASRGGGGLEELSLRFCGIGPAGCRYISSALAKSATSAAAS
ENIDSEGRSDSRGGRVSLGVLGHAQRHEGPSDVGTKRTMPEAWVDAEKAV
DGESSLVGPPSCGVRRLLLTGNQLGDGGARSLASLLAKDSSVEVLDLTRC
HIGDEGARCLADALRSNTRLRELRLCYNEISFEGASSLAALLITNRGTLE
TLELAGNRIGDSGALALARGLTGTDGGGRVGGLRREKTSTLGRREGGLRR
LNLSGNFIGCVGGCALAKALRGSSGRVVLEELELSGNPLTLSAAQAAEAS
KKNAFLYKSAGDALSSLLNQFVDESYYRPGASPSSPGGVGERDDGKFLRC
AVAAFGVSLRGEACSLKALGLARTGMTDSDALKLAAALGERSADSPLAHV
EVFLNGLGVEAMEAVRLAVESPTGPEHCSDPDEPYRFAEGRRAWARNRGN
GRSARGTRPSRSRRKSYVRGDGNDERAVLGEMQNYAPVGGNVELELFGRK
VASFRQERVTGSGLEVKVFGKRVRFERPSAASTRYSRGVNIPRSGAAASY
NGGWDRDDADSHGGFYDEDSGEEVDDEGVDEEDEDDDEEVDEEDEDDDEE
SMKRMKTMTKESMKRMKTTTMTVATTVERESKALVVPFLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt