prot_H-elongata_contig64867.14075.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64867.14075.1
Unique Nameprot_H-elongata_contig64867.14075.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length225
Homology
[Close]
BLAST of mRNA_H-elongata_contig64867.14075.1 vs. uniprot
Match: D8LGK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK2_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.560e-15
Identity = 38/54 (70.37%), Postives = 50/54 (92.59%), Query Frame = 0 
Query:  172 SASGSRRSG-GGRKPLEGNLADAIEHCRYALRALERKEVDLAVQRLHDALQQIT 224
            SA+G RRSG GG + +EGN+ADA+EHC++ALRALE+K+VDLAVQ+LH+ALQQ+T
Sbjct:   90 SAAGPRRSGSGGGRAMEGNMADAMEHCKFALRALEKKDVDLAVQKLHEALQQLT 143
[Close]
BLAST of mRNA_H-elongata_contig64867.14075.1 vs. uniprot
Match: D8LGK1_ECTSI (Vta1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK1_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.130e-7
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0 
Query:  178 RSGGGRKPLEGNLADAIEHCRYALRALERKEVDLAVQRLHDALQQIT 224
            RS  G + +EG LADA+EHCR+A+RALE ++ D A Q+L +ALQ++T
Sbjct:   25 RSSIGSRAMEGKLADAMEHCRFAIRALEFRDADSAAQKLREALQKLT 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64867.14075.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGK2_ECTSI2.560e-1570.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGK1_ECTSI1.130e-755.32Vta1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64867contigH-elongata_contig64867:238..912 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64867.14075.1mRNA_H-elongata_contig64867.14075.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64867 226..2797 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64867.14075.1 ID=prot_H-elongata_contig64867.14075.1|Name=mRNA_H-elongata_contig64867.14075.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp
MPPAEGKTPPTAVGGEGSSVIGQQESSEHGIPTLPGAAEPKEYGSLTIPE
APVDHQPIGSPAPPEDAAASFGGEGAAYFTQTGRVPSSAPSYLPPFFPGD
PSSSTGGGGEFDGMGAPPQQPLYPTEPGHESISGSVTDPALSWYATQTPA
PAPTPAPTFAPAPARPRTPVPSASGSRRSGGGRKPLEGNLADAIEHCRYA
LRALERKEVDLAVQRLHDALQQIT*
back to top