prot_H-elongata_contig64676.14061.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64676.14061.1
Unique Nameprot_H-elongata_contig64676.14061.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length92
Homology
BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Match: D8LF43_ECTSI (RPA_interact_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF43_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.830e-42
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 0
Query:    1 KDDGVLCPLCKRDYLLQVGPLSTSIVCACGFRLGTDGDRLGLENLRQQLAETFEQHSAACNAQPGFHLEGSYGFTILWSSCGGCGFARVVL 91
            +DD VLCP+CKRDYLL  GP S SIVCACGFRL T GDRLGLE+ +QQLA+T+ +HS AC+A+P F +EG+ GF +LWSSC GCGFARVVL
Sbjct:   82 QDDAVLCPVCKRDYLLHPGPPSASIVCACGFRLDTGGDRLGLEHFKQQLADTYSEHSTACSAEPSFVVEGAPGFDVLWSSCDGCGFARVVL 172          
BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Match: A0A7M5X5M2_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X5M2_9CNID)

HSP 1 Score: 62.4 bits (150), Expect = 1.570e-9
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 0
Query:    5 VLCPLCKRDYLLQVGPLSTSIVCACGFRLGTDGDRLGLENLRQQLAETFEQHSAACNAQPGFHLEGSYGFTI--LWSSCGGCGFARVVL 91
            V+CP+C+++ LLQ   +   I C CG R+ T  D + LE +R QL E+  +HS+AC   P FH+    G  I  L  SC  C    +++
Sbjct:  184 VICPVCQKNNLLQNKHI---IFCKCGIRVDTQTDAIDLEYVRNQLQESVNEHSSACQHTPSFHVADLSGVGIENLVLSCQVCDCLSIII 269          
BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Match: D8R075_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R075_SELML)

HSP 1 Score: 57.0 bits (136), Expect = 1.140e-7
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 0
Query:    1 KDDGVLCPLCKRDYLLQVGPLSTSIVCACG--FRLGTDGDRL--GLENLRQQLAETFEQH-SAACNAQPGFHLEGSYGFTILWSSCGGCGFARVVL 91
            +++GVLCPLC+R +LL       SI C+      LG+  D+L  G+E +R +LAE  +QH S+ C++QP F  +    F  L+  C  C F  VV+
Sbjct:  142 QENGVLCPLCRRGFLLDK---ENSIRCSSNGCLDLGSQRDKLKVGVEFVRIRLAELMDQHYSSGCSSQPVFTFKDE--FQSLFILCNSCDFFEVVV 232          
BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Match: UPI000D1C7D68 (uncharacterized protein LOC9653983 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C7D68)

HSP 1 Score: 57.0 bits (136), Expect = 1.680e-7
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 0
Query:    1 KDDGVLCPLCKRDYLLQVGPLSTSIVCACG--FRLGTDGDRL--GLENLRQQLAETFEQH-SAACNAQPGFHLEGSYGFTILWSSCGGCGFARVVL 91
            +++GVLCPLC+R +LL       SI C+      LG+  D+L  G+E +R +LAE  +QH S+ C++QP F  +    F  L+  C  C F  VV+
Sbjct:  213 QENGVLCPLCRRGFLLDK---ENSIRCSSNGCLDLGSQRDKLKVGVEFVRIRLAELMDQHYSSGCSSQPVFTFKDE--FQSLFILCNSCDFFEVVV 303          
BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Match: A0A2R5L8J5_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5L8J5_9ACAR)

HSP 1 Score: 54.7 bits (130), Expect = 5.500e-7
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 0
Query:    3 DGVLCPLCKRDYLLQVGPLSTSIVCACGFRLGTDGDRLGLENLRQQLAETFEQHSAACNAQPGF 66
            DGVLCP+C R+YL + GP    + C CG  L TD     +E ++Q +++    HS+ C A+P F
Sbjct:  129 DGVLCPVCFRNYLTRSGPF---VACPCGLVLRTDKS---VEGIQQAISDAVASHSSNCTARPLF 186          
BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Match: UPI001CFD4A64 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD4A64)

HSP 1 Score: 50.1 bits (118), Expect = 5.680e-5
Identity = 21/59 (35.59%), Postives = 36/59 (61.02%), Query Frame = 0
Query:    6 LCPLCKRDYLLQVGPLSTSIVCACGFRLGTDGDRLGLENLRQQLAETFEQHSAACNAQP 64
            LCPLCK++ LL+      S+ C CG R+ T  + L ++ + QQ+ + + +H + CN +P
Sbjct:  167 LCPLCKKNNLLET---KHSLCCKCGLRIPTSLNGLSVKFVSQQVIDCYGEHKSQCNKEP 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64676.14061.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LF43_ECTSI2.830e-4270.33RPA_interact_C domain-containing protein n=1 Tax=E... [more]
A0A7M5X5M2_9CNID1.570e-937.08Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
D8R075_SELML1.140e-738.54Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
UPI000D1C7D681.680e-738.54uncharacterized protein LOC9653983 n=1 Tax=Selagin... [more]
A0A2R5L8J5_9ACAR5.500e-740.63Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
UPI001CFD4A645.680e-535.59uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028159RPA-interacting protein, C-terminal domainPFAMPF14768RPA_interact_Ccoord: 6..88
e-value: 1.3E-20
score: 73.7
IPR028156RPA-interacting proteinPANTHERPTHR31742FAMILY NOT NAMEDcoord: 3..91
NoneNo IPR availablePRODOMPD472859coord: 3..91
e-value: 3.0E-6
score: 115.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64676contigH-elongata_contig64676:2652..3241 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64676.14061.1mRNA_H-elongata_contig64676.14061.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64676 2652..3241 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64676.14061.1 ID=prot_H-elongata_contig64676.14061.1|Name=mRNA_H-elongata_contig64676.14061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
KDDGVLCPLCKRDYLLQVGPLSTSIVCACGFRLGTDGDRLGLENLRQQLA
ETFEQHSAACNAQPGFHLEGSYGFTILWSSCGGCGFARVVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028159RPA_interact_C_dom
IPR028156RIP