prot_H-elongata_contig64658.14059.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64658.14059.1
Unique Nameprot_H-elongata_contig64658.14059.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length242
Homology
BLAST of mRNA_H-elongata_contig64658.14059.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.330e-21
Identity = 95/207 (45.89%), Postives = 103/207 (49.76%), Query Frame = 0
Query:    2 CGGSGCSS-----FGTTCCISDIEETCSETGEAPCYIDDDVETETS-----------SGS-TCSNGFDGVESSSGKYCCTDDCSACGGSGCSS-----FGTTCCISDIEETCSETGEAPCYIDDDDSPSPTSSTTP-TGS-TCSNGFDGVESSSGNYCCTDDCSACGGSXXXXXXXXXX-----ISDIEEACSETGEAPCYIDDDST 179
            CGGSGCS       G  CC SDI   CS TG APC +D D                 SGS TC    DGV    G YCC+  C  CGGSGCS       G  CC SDI   CS TG APC +D D SP+        +GS TC    DGV    G+YCC+  C  CGG XXXXXXX         SDI   CS TG APC +D DST
Sbjct:  178 CGGSGCSDRGGGLTGADCCTSDISNLCSVTGAAPCIVDGDTSPTXXXXXXXXXXXXXSGSFTC----DGVLK--GDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDISNLCSVTGAAPCIVDGDTSPTXXXXXXXXSGSFTC----DGVLK--GDYCCSAGCGECGGXXXXXXXXGLTGADCCTSDISNLCSVTGAAPCIVDGDST 372          
BLAST of mRNA_H-elongata_contig64658.14059.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.650e-7
Identity = 49/155 (31.61%), Postives = 71/155 (45.81%), Query Frame = 0
Query:   37 VETETSSGSTCSNGFDGVESSSGKYCCTDDCSACGGSGCSSFGTT------CCISDIEET---CSETGEAPCYIDDDDSPSPTSSTTPTGSTCSNGFDGVESSSGNYCCTDDCS-ACGGSXXXXXXXXXX-------ISDIEEACSETGEAPCYI 174
            V T T +G+ CSNG +G++S+S   CC ++C  CGG GC+   T+      CC ++I E+   C  +  APC I        T++     S C NG  GV+    + CC   C  +CGG                  I +    CS+T  APC +
Sbjct:   20 VGTMTPAGAVCSNGLEGIQSTSLDACCVEECGLCGGVGCTPANTSSLTSADCCATEIIESGTLCEVSMAAPCII--------TTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVV 166          
BLAST of mRNA_H-elongata_contig64658.14059.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.590e-6
Identity = 48/155 (30.97%), Postives = 69/155 (44.52%), Query Frame = 0
Query:   37 VETETSSGSTCSNGFDGVESSSGKYCCTDDCSACGGSGCSSFGTT------CCISDIEET---CSETGEAPCYIDDDDSPSPTSSTTPTGSTCSNGFDGVESSSGNYCCTDDCS-ACGGSXXXXXXXXXX-------ISDIEEACSETGEAPCYI 174
            V T T +G+ CSNG +G++S+S   CC + C  CGG  C+   T+      CC ++I E+   C  +  APC I        T++     S C NG  GV     + CC  +C  +CGG                  I +    CS+T  APC +
Sbjct:   20 VGTMTPAGAVCSNGLEGIQSTSLDVCCVEGCEVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCII--------TTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVV 166          
BLAST of mRNA_H-elongata_contig64658.14059.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 5.980e-5
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 0
Query:   44 GSTCSNGFDGVESSSGKYCCTDDCSACGGSGCSSFGT-------TCCISDIEET---CSETGEAPCYIDDDDSPSPTSS 112
            G TC+NG +G++ + G  CC   C  C G GC++FG+       +CC + I+ +   CSETG APC ID++  PSPT S
Sbjct:   22 GDTCTNGIEGIDGN-GVVCCPLGCGRCAGEGCTAFGSENGLGADSCCGNAIKASGRLCSETGSAPCIIDEE-GPSPTPS 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64658.14059.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FWE8_ECTSI1.330e-2145.89Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LML5_ECTSI1.650e-731.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7R2_9PHAE2.590e-630.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRN1_ECTSI5.980e-543.04Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64658contigH-elongata_contig64658:104..2699 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64658.14059.1mRNA_H-elongata_contig64658.14059.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64658 102..2699 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64658.14059.1 ID=prot_H-elongata_contig64658.14059.1|Name=mRNA_H-elongata_contig64658.14059.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
ACGGSGCSSFGTTCCISDIEETCSETGEAPCYIDDDVETETSSGSTCSNG
FDGVESSSGKYCCTDDCSACGGSGCSSFGTTCCISDIEETCSETGEAPCY
IDDDDSPSPTSSTTPTGSTCSNGFDGVESSSGNYCCTDDCSACGGSDCSS
FGTTCCISDIEEACSETGEAPCYIDDDSTSPTPTTSTSTSTDSTSTSTTP
TVVPSPSYPMPVSSPTPVMTIPDSCTDSLPTIRYAESSGVAG
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