prot_H-elongata_contig64637.14056.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64637.14056.1
Unique Nameprot_H-elongata_contig64637.14056.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: D8LQ01_ECTSI (Structural maintenance of chromosomes protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ01_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.560e-51
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 0
Query:   15 SRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYEE 114
            +RLLITK+EMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKL LNK+ ELIHRSDTYPNL++ RVSVHFVDILDV  SED+YEE
Sbjct:   84 ARLLITKMEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLCLNKLGELIHRSDTYPNLDFCRVSVHFVDILDVSGSEDDYEE 183          
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A835YML7_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YML7_9STRA)

HSP 1 Score: 179 bits (455), Expect = 5.670e-50
Identity = 88/100 (88.00%), Postives = 96/100 (96.00%), Query Frame = 0
Query:   15 SRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYEE 114
            SRLLITKL MENFKSYGG+REIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRS+TYPNL+ A+VSVHFVDI+D ++SED+Y E
Sbjct:   39 SRLLITKLVMENFKSYGGVREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSETYPNLDAAKVSVHFVDIIDDQSSEDDYAE 138          
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A7S3GXC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXC7_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.360e-47
Identity = 75/101 (74.26%), Postives = 90/101 (89.11%), Query Frame = 0
Query:   13 RTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYE 113
            R +RL+ITK+ +ENFKSY G +EIGPFHK FSSIVGPNGSGKSNVIDA+LFVFGK+AK+LRLNKVSELIH+S TYPNL++ RV+VHF  I D+E S+D+YE
Sbjct:    4 RKARLMITKMVLENFKSYAGCQEIGPFHKRFSSIVGPNGSGKSNVIDALLFVFGKKAKQLRLNKVSELIHKSATYPNLDFTRVAVHFQLIYDIEESDDDYE 104          
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A813A1Q5_9DINO (SMC4 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A1Q5_9DINO)

HSP 1 Score: 157 bits (398), Expect = 4.560e-47
Identity = 73/97 (75.26%), Postives = 87/97 (89.69%), Query Frame = 0
Query:   16 RLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNY 112
            RL+IT+LE ENFKSYGG++ IGPFHK FS++VGPNGSGKSNVID MLFVFGKRAKKLRLNK+SELIH+SD YPNL++ARVSV+F DI+D  + +D Y
Sbjct:   10 RLMITRLEFENFKSYGGVKSIGPFHKRFSAVVGPNGSGKSNVIDGMLFVFGKRAKKLRLNKLSELIHKSDQYPNLDFARVSVYFQDIIDTSDEDDGY 106          
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: F0YFI0_AURAN (Structural maintenance of chromosomes protein 4 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFI0_AURAN)

HSP 1 Score: 169 bits (428), Expect = 2.510e-46
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 0
Query:    1 MGGSSPMPAIAERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYE 113
            M   S MP     T RL+I K+ +ENFKSYGG REIGPFHK FSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIH+SDTYP+L++A+VSVHF D++D+++  D YE
Sbjct:  833 MDDDSNMPPTTAATPRLMIEKMVLENFKSYGGQREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHKSDTYPDLDWAKVSVHFADVIDLQDGTDAYE 945          
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: I2CP68_NANGC (Structural maintenance of chromosome 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP68_NANGC)

HSP 1 Score: 155 bits (393), Expect = 1.880e-43
Identity = 77/109 (70.64%), Postives = 92/109 (84.40%), Query Frame = 0
Query:    3 GSSPMPAIAERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDN 111
            G+ P P    R SRL+I K+ +ENFKSY G++EIGPFHKCFSS+VGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIH+S+ +P+LE A VSVHF +I+D ++  DN
Sbjct:    4 GTEPSPEEGGR-SRLMIVKMVLENFKSYAGIKEIGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHKSEQHPSLESASVSVHFQEIVDRDDLGDN 111          
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A8J2SP08_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP08_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.270e-43
Identity = 77/95 (81.05%), Postives = 88/95 (92.63%), Query Frame = 0
Query:   15 SRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSE 109
            SRL+ITK+ +ENFKSYGG+REIGPFHK FSS+VGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRS+ YPNL+ ARVSVHF D+LD + ++
Sbjct:   14 SRLMITKMVLENFKSYGGVREIGPFHKRFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSEQYPNLDSARVSVHFADVLDEDGAD 108          
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A812TSM6_SYMMI (SMC4 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TSM6_SYMMI)

HSP 1 Score: 155 bits (392), Expect = 8.620e-43
Identity = 75/103 (72.82%), Postives = 93/103 (90.29%), Query Frame = 0
Query:   11 AERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYE 113
            A++T+RL+IT + +ENFKSY G +EIGPFHK FSSIVGPNGSGKSNVIDA+LFVFGKRAK+LRLNKVSELIHRS  +P+LEYA+V+V+F  I+D E+S+D+YE
Sbjct:    8 ADKTTRLMITSMVLENFKSYAGEQEIGPFHKRFSSIVGPNGSGKSNVIDALLFVFGKRAKQLRLNKVSELIHRSSRFPDLEYAKVAVYFQLIIDDESSQDDYE 110          
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A485LJE1_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJE1_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.700e-42
Identity = 79/116 (68.10%), Postives = 95/116 (81.90%), Query Frame = 0
Query:    4 SSPMPAI-------AERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNY 112
            S+P PA        A+ T RL+I+KLE+ENFKSY G+REIGPFHKCFSS+VGPNGSGKSNVIDA+LFVFGKRAKKLRL+KVSELIH+S  Y NL+ ARVSV F DI+D  + +++Y
Sbjct:   90 STPAPATPRESVAPAKDTPRLMISKLEVENFKSYAGVREIGPFHKCFSSVVGPNGSGKSNVIDALLFVFGKRAKKLRLSKVSELIHKSSNYQNLKEARVSVFFQDIIDTGDGDEDY 205          
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Match: A0A662WP66_9STRA (SMC hinge domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WP66_9STRA)

HSP 1 Score: 156 bits (395), Expect = 6.800e-42
Identity = 75/108 (69.44%), Postives = 88/108 (81.48%), Query Frame = 0
Query:    6 PMPAIAERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFVDILDVENSEDNYE 113
            P PA AE   RL+ITK+++ENFKSY G  EIGPFHKCFS++VGPNGSGKSNVIDA+LFVFGKRA KLRL KVSEL+HRS  +PNL+ A VSV F +I+D+E  ED  E
Sbjct:   41 PTPAKAEPVKRLMITKMQLENFKSYAGKVEIGPFHKCFSAVVGPNGSGKSNVIDALLFVFGKRASKLRLKKVSELVHRSAAFPNLDMATVSVFFQEIIDIEGGEDTAE 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64637.14056.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ01_ECTSI2.560e-5189.00Structural maintenance of chromosomes protein n=2 ... [more]
A0A835YML7_9STRA5.670e-5088.00Structural maintenance of chromosomes protein n=1 ... [more]
A0A7S3GXC7_9STRA1.360e-4774.26Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A813A1Q5_9DINO4.560e-4775.26SMC4 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
F0YFI0_AURAN2.510e-4672.57Structural maintenance of chromosomes protein 4 n=... [more]
I2CP68_NANGC1.880e-4370.64Structural maintenance of chromosome 4 (Fragment) ... [more]
A0A8J2SP08_9STRA2.270e-4381.05Structural maintenance of chromosomes protein n=1 ... [more]
A0A812TSM6_SYMMI8.620e-4372.82SMC4 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A485LJE1_9STRA3.700e-4268.10Structural maintenance of chromosomes protein n=1 ... [more]
A0A662WP66_9STRA6.800e-4269.44SMC hinge domain-containing protein (Fragment) n=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 18..119
e-value: 3.1E-25
score: 91.4
NoneNo IPR availablePANTHERPTHR43939:SF1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 4coord: 13..107
NoneNo IPR availablePANTHERPTHR43939FAMILY NOT NAMEDcoord: 13..107
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 19..107
e-value: 6.3E-29
score: 101.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 19..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64637contigH-elongata_contig64637:1090..1452 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64637.14056.1mRNA_H-elongata_contig64637.14056.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64637 1090..1470 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64637.14056.1 ID=prot_H-elongata_contig64637.14056.1|Name=mRNA_H-elongata_contig64637.14056.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MGGSSPMPAIAERTSRLLITKLEMENFKSYGGLREIGPFHKCFSSIVGPN
GSGKSNVIDAMLFVFGKRAKKLRLNKVSELIHRSDTYPNLEYARVSVHFV
DILDVENSEDNYEEARKVCA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027417P-loop_NTPase