prot_H-elongata_contig64542.14042.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64542.14042.1
Unique Nameprot_H-elongata_contig64542.14042.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length362
Homology
BLAST of mRNA_H-elongata_contig64542.14042.1 vs. uniprot
Match: D8LKQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ3_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 3.370e-25
Identity = 104/305 (34.10%), Postives = 134/305 (43.93%), Query Frame = 0
Query:  105 DDGELPPCLLGVFDSFFGG------------RSKNG-----------------APPAPRSPSTMTGVSVGVGRAAFAQLHIRDLNDIKNLSGARIVAPDSPESFGNISEDVMANVSAI-SRVARGNAPVEGFGLAVSNIEVNQATAAGATGASSSPVDPMSSAL-----------------SKPAEHFGRETDELYGMSRLSLDHSYRFVGTAADAMQRESAMGSRLILKHRHPFGGAAAGHGENMLEAVTMPQGFGDKGGDVEGRIAYRSPLKMVRITGTAEEVQLAEYLIRVRTAVLDTEAAS 362
            DDGELP CL+G+ DSF GG            RS +G                 A P  RSPST+TG+ + VGR+AFA+L  R L+DIK+LSGA I AP+SPE + ++S++  A + A+ S  ARGNAP +G GLA +N                                           S P E F         MS  +         T   A+   +   SRL+L   +       G   ++  AV    G            A  + LK V+ITGTAEEVQLAEYLIRV T   +  AAS
Sbjct:  123 DDGELPSCLVGILDSFLGGGGKSYVSDGNSIRSGSGGXXXXXXXXXXXXXXXXAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYYHLSDEAAAAMGAVYSSAARGNAPCDGVGLAAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSPFEGFRLREGVRGNMSDGAA--------TTPGAIAAVTGGVSRLVLDTTNSXXXXXNGVSPSLASAVGHVSGGLAXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVSTTGGNMAAAS 419          
BLAST of mRNA_H-elongata_contig64542.14042.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.620e-22
Identity = 101/317 (31.86%), Postives = 130/317 (41.01%), Query Frame = 0
Query:  105 DDGELPPCLLGVFDSFFGGRSK-------------------------------NGAPPAPRSPSTMTGVSVGVGRAAFAQLHIRDLNDIKNLSGARIVAPDSPESFGNISEDVMANVSAI-SRVARGNAPVEGFGLAVSNIEVNQATAAGATGASSSPVDPMSSAL---------------------------SKPAEHFGRETDELYGMSRLSLDHSYRFVGTAADAMQRESAMGSRLILKHRHPFGGAAAGHGENMLEAVTMPQGFGDKGGDVEGRIAYRSPLKMVRITGTAEEVQLAEYLIRVRTAVLDTEAAS 362
            DDGELP CL+G+ DSF GG  K                               NGA P  RSPST+TG+ + VGR+AFA+L  R L+DIK+LSGA I AP+SPE + ++S++ +A + A+ S  ARGNAP +G GLA                                                        S P E FG +      M   +        G  A      S +G    +          +    ++  AV    G            A  + LK V+ITGTAEEVQLAEYLIRVRT   +  AAS
Sbjct:  518 DDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSGNXGSVGNSNANEKNGNNNGAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYCHLSDEALAAMGAVYSSAARGNAPCDGVGLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPFEGFGLKEGVRGNMGGGAATTP----GAIAAVTGGVSRLGLGTTMSXXXXXXXXVS---PSLASAVGQVSGGLXXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVRTTGGNMAAAS 827          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64542.14042.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKQ3_ECTSI3.370e-2534.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8U0_9PHAE1.620e-2231.86KH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64542contigH-elongata_contig64542:1639..2724 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64542.14042.1mRNA_H-elongata_contig64542.14042.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64542 1639..2724 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64542.14042.1 ID=prot_H-elongata_contig64542.14042.1|Name=mRNA_H-elongata_contig64542.14042.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=362bp
MLSSPPPAAITPDPSGEKGRGTNTTPLQSSPPKGSPCGSTNGSVEDFGST
SDARLMFDRGPFSSPATNTTGGAVVPALDAGGAASVASGSALEDSGGVAI
GVNRDDGELPPCLLGVFDSFFGGRSKNGAPPAPRSPSTMTGVSVGVGRAA
FAQLHIRDLNDIKNLSGARIVAPDSPESFGNISEDVMANVSAISRVARGN
APVEGFGLAVSNIEVNQATAAGATGASSSPVDPMSSALSKPAEHFGRETD
ELYGMSRLSLDHSYRFVGTAADAMQRESAMGSRLILKHRHPFGGAAAGHG
ENMLEAVTMPQGFGDKGGDVEGRIAYRSPLKMVRITGTAEEVQLAEYLIR
VRTAVLDTEAAS
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