prot_H-elongata_contig64542.14041.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64542.14041.1
Unique Nameprot_H-elongata_contig64542.14041.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
BLAST of mRNA_H-elongata_contig64542.14041.1 vs. uniprot
Match: D8LKQ4_ECTSI (Poly(Rc) binding protien (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ4_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.990e-44
Identity = 81/103 (78.64%), Postives = 86/103 (83.50%), Query Frame = 0
Query:    1 SGAKVTISDSCDGVQHDLDDRTVTASGTFNAVQLAFTHILSHAGTQGPDAGPVMGFTG--VDCAANCFRILIPNVKAGGLIGRGGLTIKTIRERSGARIEISS 101
            SGAKVTISDSC G+  D DDR VTA+GTFN+VQLAFTHILSHAG  GPDA PVMG  G   DC AN FR+LIPNVKAGGLIGRGG TIK IRE+SGARIEISS
Sbjct:  130 SGAKVTISDSCTGLHGDSDDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISS 232          
BLAST of mRNA_H-elongata_contig64542.14041.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.400e-31
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = 0
Query:   23 VTASGTFNAVQLAFTHILSHAGTQGPDAGPVMGFTG--VDCAANCFRILIPNVKAGGLIGRGGLTIKTIRERSGARIEISS 101
            VTA+GTFN+VQLAFTHILSHAG  GPDA PVMG  G   DC AN FR+LIPNVKAGGLIGRGG TIK IRE+SGARIEISS
Sbjct:    2 VTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISS 82          
BLAST of mRNA_H-elongata_contig64542.14041.1 vs. uniprot
Match: A0A836CIH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.050e-12
Identity = 58/126 (46.03%), Postives = 67/126 (53.17%), Query Frame = 0
Query:    1 SGAKVTISDSCD------GVQHDLDDRTVTASGTFNAVQLAFTHILSHAGTQGPDAG-PVMGFT--------------GVDCAA----NCFRILIPNVKAGGLIGRGGLTIKTIRERSGARIEISS 101
            SGA+VTISD+ D      G      +R V   G+F AV  A   IL+HA T  P  G P+ G                 VD A     + FR+LIPN KAG LIGRGG TIK IR+ SGARIEISS
Sbjct:  135 SGARVTISDAGDDAGWAGGGGPGGGERLVHLVGSFGAVVAALGAILAHAET--PSNGEPLPGLAQLVAGGLLSGEAAAAVDAAITVPPSAFRMLIPNAKAGALIGRGGTTIKAIRDASGARIEISS 258          
BLAST of mRNA_H-elongata_contig64542.14041.1 vs. uniprot
Match: A0A6V7UXE4_9BILA (Hypothetical protein n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7UXE4_9BILA)

HSP 1 Score: 54.3 bits (129), Expect = 9.950e-7
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 0
Query:    1 SGAKVTISD-SCDGVQHDLDDRTVTASGTFNAVQLAFTHILSHAGTQGPDAGPVMGFTGVDCAANCFRILIPNVKAGGLIGRGGLTIKTIRERSGARIEISSD 102
            SGAK+ I+D SC        +R VT SGTF A+  AFT I+       P        TG        R++IP  + G LIG+GG  I+ IR+++GA ++++++
Sbjct:   26 SGAKINITDGSC-------PERIVTISGTFAAIDQAFTLIVRKFEEDIPSTQ-----TGAIKPPITLRLIIPASQCGSLIGKGGSKIREIRDKTGASLQVANE 116          
BLAST of mRNA_H-elongata_contig64542.14041.1 vs. uniprot
Match: A0A6V7TWH2_9BILA (Hypothetical protein n=3 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7TWH2_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 3.370e-6
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 0
Query:    1 SGAKVTISD-SCDGVQHDLDDRTVTASGTFNAVQLAFTHILSHAGTQGPDAGPVMGFTGVDCAANCFRILIPNVKAGGLIGRGGLTIKTIRERSGARIEISSD 102
            SGAK+ I+D SC        +R VT SGTF A+  AFT I+       P        TG        R++IP  + G LIG+GG  I+ IR+++GA ++++++
Sbjct:   88 SGAKINITDGSC-------PERIVTISGTFVAIDQAFTLIVRKFEEDIPSTQ-----TGAIKPPITLRLIIPASQCGSLIGKGGSKIREIRDKTGASLQVANE 178          
BLAST of mRNA_H-elongata_contig64542.14041.1 vs. uniprot
Match: A0A0C9QNP6_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_15816_1716 transcribed RNA sequence n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9QNP6_9SPER)

HSP 1 Score: 49.7 bits (117), Expect = 9.930e-5
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 0
Query:   20 DRTVTASGTFNAVQLAFTHILSHAGTQGPDAGPVMGFTGVDCAANCFRILIPNVKAGGLIGRGGLTIKTIRERSGARIEISS 101
            DR V+ +GT N V +A   IL+    +  +   V   TG        R+++PN   GG+IG+GG TIK+  E S A I++SS
Sbjct:   93 DRIVSVTGTINEVLVAANLILAKLSNEAEENNDVDEKTGQ------VRLILPNSVCGGIIGKGGATIKSFVEDSQASIKLSS 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64542.14041.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LKQ4_ECTSI1.990e-4478.64Poly(Rc) binding protien (Partial) (Fragment) n=1 ... [more]
A0A6H5L8U0_9PHAE1.400e-3180.25KH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CIH4_9STRA2.050e-1246.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V7UXE4_9BILA9.950e-735.92Hypothetical protein n=1 Tax=Meloidogyne enterolob... [more]
A0A6V7TWH2_9BILA3.370e-635.92Hypothetical protein n=3 Tax=Meloidogyne enterolob... [more]
A0A0C9QNP6_9SPER9.930e-537.80TSA: Wollemia nobilis Ref_Wollemi_Transcript_15816... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 67..100
e-value: 3.8E-9
score: 36.2
NoneNo IPR availableGENE3D3.30.310.210coord: 1..102
e-value: 1.5E-14
score: 56.0
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 1..99
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 63..102
score: 13.586
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 65..102
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 1..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64542contigH-elongata_contig64542:709..1014 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64542.14041.1mRNA_H-elongata_contig64542.14041.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64542 709..1014 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64542.14041.1 ID=prot_H-elongata_contig64542.14041.1|Name=mRNA_H-elongata_contig64542.14041.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
SGAKVTISDSCDGVQHDLDDRTVTASGTFNAVQLAFTHILSHAGTQGPDA
GPVMGFTGVDCAANCFRILIPNVKAGGLIGRGGLTIKTIRERSGARIEIS
SD
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR036612KH_dom_type_1_sf