prot_H-elongata_contig6429.14017.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6429.14017.1
Unique Nameprot_H-elongata_contig6429.14017.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length141
Homology
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 3.870e-33
Identity = 61/140 (43.57%), Postives = 90/140 (64.29%), Query Frame = 0
Query:    1 MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 140
            +DFF + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++++P G+   S  IV+ E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+++V++VDD+ VAG++ +  EL   LN
Sbjct:   35 VDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDEDCEELLASLN 173          
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.590e-30
Identity = 62/140 (44.29%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    1 MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 140
            +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct:  477 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLN 615          
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.750e-30
Identity = 62/140 (44.29%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    1 MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 140
            +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct:  616 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLN 754          
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.850e-30
Identity = 62/140 (44.29%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    1 MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 140
            +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct:  816 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLN 954          
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.980e-30
Identity = 62/140 (44.29%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    1 MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 140
            +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct: 1195 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLN 1333          
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 7.990e-30
Identity = 62/140 (44.29%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    1 MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 140
            +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct: 1215 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLN 1353          
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 8.010e-30
Identity = 62/140 (44.29%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    1 MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 140
            +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct: 1358 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLN 1496          
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.520e-29
Identity = 60/135 (44.44%), Postives = 86/135 (63.70%), Query Frame = 0
Query:    1 MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSEL 135
            +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL
Sbjct:  370 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEEL 503          
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 4.640e-29
Identity = 59/134 (44.03%), Postives = 85/134 (63.43%), Query Frame = 0
Query:    1 MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSE 134
            +D+F + +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V++KLP G    S  I + E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  E
Sbjct:  116 VDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE 248          
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 5.050e-29
Identity = 62/140 (44.29%), Postives = 89/140 (63.57%), Query Frame = 0
Query:    1 MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYMKLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTDPCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLN 140
            +D+F++ +P  ++AS+ ++LAV NE G  +NH D  QA   A LD  V+ +LP G    S  IV+ E+A+YG +QSG  W      T V  +G EQCK DPC+FRK  D  VV+I+V++VDD+ VAG++ +  EL   LN
Sbjct:  925 VDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLV-ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLN 1063          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6429.14017.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIS9_9PHAE3.870e-3343.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JU90_9PHAE7.590e-3044.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTV6_9PHAE7.750e-3044.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE7.850e-3044.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE7.980e-3044.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE7.990e-3044.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE8.010e-3044.29Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JC10_9PHAE3.520e-2944.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE4.640e-2944.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQW4_9PHAE5.050e-2944.29Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..132
e-value: 4.0E-23
score: 82.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6429contigH-elongata_contig6429:9783..10205 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6429.14017.1mRNA_H-elongata_contig6429.14017.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6429 9714..10205 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6429.14017.1 ID=prot_H-elongata_contig6429.14017.1|Name=mRNA_H-elongata_contig6429.14017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MDFFQTVAPTSAAASVNIVLAVTNELGYPVNHLDTAQAVMQAELDCTVYM
KLPGGFSSLSGNIVRLEKALYGRRQSGLLWNSLLVKTFVMRHGMEQCKTD
PCMFRKFRDGKVVLILVVHVDDMTVAGTENEVSELHPVLND
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2