prot_H-elongata_contig6402.13990.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6402.13990.1
Unique Nameprot_H-elongata_contig6402.13990.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length833
Homology
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BLAST of mRNA_H-elongata_contig6402.13990.1 vs. uniprot
Match: A0A6H5L120_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L120_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.140e-11
Identity = 65/156 (41.67%), Postives = 74/156 (47.44%), Query Frame = 0 
Query:   50 SFATVAERRLTEQQIRNQHIPLP-------------------------------APGT-------PISTRRRHQYRRGSRFSARRLPVGERDSDSGSDYQDRHQQHPPDGMGVLGSGMVDPHVEGEIQQVEDLMLMEALRLSVLEEQARRERSGDM 167
            SFATVAERR+TE QIR QH+P                                 APG+         +  R H  RRGSR      P   R    G+   D   +   DG+G           EGEIQQVEDLML+EALRLSVLEEQARRERSGD+
Sbjct:  258 SFATVAERRMTEDQIRKQHVPPATXXXXXXXXXSIGRQSSMGAAAGARTAGGRVAPGSLKHALAVSAAAGRHHHNRRGSRIG----PGRRRSYLEGAGGNDGGNEFHADGVG-----------EGEIQQVEDLMLVEALRLSVLEEQARRERSGDL 398
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BLAST of mRNA_H-elongata_contig6402.13990.1 vs. uniprot
Match: D8LDS6_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS6_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.380e-6
Identity = 45/86 (52.33%), Postives = 50/86 (58.14%), Query Frame = 0 
Query:   82 RRHQYRRGSRFSARRLPVGERDSDSGSDYQDRHQQHPPDGMGVLGSGMVDPHVEGEIQQVEDLMLMEALRLSVLEEQARRERSGDM 167
            R H  RRGSR      P   R    G+   D   +   DG+G           EGEIQQVEDLML+EALRLSVLEEQARRERSGD+
Sbjct:  360 RHHHNRRGSRIG----PGRRRSYLEGAGGNDGADEFHADGVG-----------EGEIQQVEDLMLVEALRLSVLEEQARRERSGDL 430
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6402.13990.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L120_9PHAE1.140e-1141.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LDS6_ECTSI2.380e-652.33RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 663..683
IPR003903Ubiquitin interacting motifSMARTSM00726uimcoord: 141..160
e-value: 200.0
score: 6.6
coord: 449..468
e-value: 0.3
score: 20.1
IPR003903Ubiquitin interacting motifPROSITEPS50330UIMcoord: 449..468
score: 8.903

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6402contigH-elongata_contig6402:2782..10244 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6402.13990.1mRNA_H-elongata_contig6402.13990.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6402 1348..10299 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6402.13990.1 ID=prot_H-elongata_contig6402.13990.1|Name=mRNA_H-elongata_contig6402.13990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=833bp
MRQIEERKLRDNDSTGATAAADASGGGAVGAEASKTGSGPRPSASSGRLS
FATVAERRLTEQQIRNQHIPLPAPGTPISTRRRHQYRRGSRFSARRLPVG
ERDSDSGSDYQDRHQQHPPDGMGVLGSGMVDPHVEGEIQQVEDLMLMEAL
RLSVLEEQARRERSGDMRRAAAAAAAATAGGGPGGSSGAASSASLGARLS
GSYWNSLLPPVRAASTSATAGDSLSSASASASEPMSFLSGGGLPRWRDVE
GIQRDLMATGDGSGLSTRRGEEATVTALTVETSGTAAAPEAGAVEALRRV
LPAREQEGRSGEGSGTAASASGNPAPVSVAPNHSDATPPLAASMGERSLS
FRQQQQPESAFTIEQSPHTTRAPIAVGEAEAGGGRGGNGNGRSARYGGMN
AAAGGDSCARGRDYGSEVGGRTARAAAAEAITIARENAMEGYLSELPESE
EEQLEIAIALSLRSSGNGNSDGNMRARITGAGDLERMLEDPGGGSSTSGI
FGSETSTVTPFASSGGGGAAGDASPTEGDLVRAARLAGLGSLDEDFTTDP
LAAEEMWSITADGEGKKEEVSSFDSSLFSVSSEAPASSAAAAVGGCDARS
FSRPPPQGAREEEEVVRKLPASTLEGEGSSSGTTDAFEAAVADFSAFASA
ATGAGPFAPGPILSEEEEKKEENTSRLQRATRRGGDGASAEERLESRSVA
ASSVHGASGPSKAGERQLEGLVSERVGSTPIFTASSIAAFSSAASCIAEI
GGGHGVDGDFAVAERDDGGGVQVPATGSGVPSTEILGAAVTAEETSPETA
AAEVGSGVESIGVQMGVGGSNEAGKEASGAPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003903UIM_dom