prot_H-elongata_contig64017.13988.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig64017.13988.1
Unique Nameprot_H-elongata_contig64017.13988.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length186
Homology
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BLAST of mRNA_H-elongata_contig64017.13988.1 vs. uniprot
Match: D7FK56_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK56_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 3.100e-52
Identity = 127/193 (65.80%), Postives = 147/193 (76.17%), Query Frame = 0 
Query:    2 LVKELRDREEDALAEARSWRDRLETQQSDSDLQLDAAREEISELQAQVVELSGVEDELREAFKELRRYRKR--GVDEGH-----KDDREGVHSGDRGPGKKEDA--EGLRAVATVTAAAKAVEEELREQLEAKDEALRYVENELLGMKPLFEGKEALLRQELGSERDKLAKEAKEWKRRAEEAATRRSATEAS 185
            LVKELR RE DALAEA++WRDRL+ QQ++SD +LDAAREE+SEL+AQVV LSGVED+LRE FKELRRYRKR    D+G       DDR+G  S   G G+++ +    L AVA VTAAAKAVEEELR QLEAKD+ALRYVENELLGMK LFE KEA LRQELG ERDKLA E    ++R E+A   R+A E S
Sbjct: 1109 LVKELRLREGDALAEAQAWRDRLDAQQAESDQRLDAAREEVSELEAQVVALSGVEDQLREVFKELRRYRKRHESEDDGKGDGXXXDDRQGGESSRDGSGRRQRSCSTELTAVAAVTAAAKAVEEELRAQLEAKDQALRYVENELLGMKSLFESKEACLRQELGEERDKLAGEVGVLRQRLEQAEESRAAAEES 1301
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BLAST of mRNA_H-elongata_contig64017.13988.1 vs. uniprot
Match: A0A6H5LCW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCW9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.780e-43
Identity = 115/203 (56.65%), Postives = 132/203 (65.02%), Query Frame = 0 
Query:    2 LVKELRDREEDALAEARSWRDRLETQQSDSDLQLDAAREEISELQAQ------------VVELSGVEDELREAFKELRRYRKRGVDEGHKDDREGVHSGDRGPGKKEDAEGLRAVATVTAAAKAVEEELREQLEAKDEALR-------YVENELLGMKPLFEGKEALLRQELGSERDKLAKEAKEWKRRAEEAATRRSATEAS 185
            L+KELR RE DALAEA++WRDRL+ QQ++SD +LDAAREE+SEL+AQ            VV LSGVED+LRE  KELRRYRKR   E             +G         L AV  VTAAAKAVEEELR QLEAKD+ALR       YVENELLGMK +FE KEA LRQEL  ERDKLA E    ++R E+A   R+A E S
Sbjct:   28 LIKELRLREGDALAEAQAWRDRLDAQQAESDQRLDAAREEVSELEAQASRSIFVDRGLSVVALSGVEDQLREVCKELRRYRKRHESEXXXXXXXXXXXXRQGE--------LTAVGAVTAAAKAVEEELRAQLEAKDQALRRVAPLLSYVENELLGMKSMFERKEACLRQELSEERDKLAGEVGVLRQRLEQAEAGRAAAEES 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig64017.13988.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK56_ECTSI3.100e-5265.80Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5LCW9_9PHAE2.780e-4356.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 111..135
NoneNo IPR availableCOILSCoilCoilcoord: 3..72
NoneNo IPR availableCOILSCoilCoilcoord: 151..178

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig64017contigH-elongata_contig64017:16..1639 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig64017.13988.1mRNA_H-elongata_contig64017.13988.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig64017 16..1639 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig64017.13988.1 ID=prot_H-elongata_contig64017.13988.1|Name=mRNA_H-elongata_contig64017.13988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
QLVKELRDREEDALAEARSWRDRLETQQSDSDLQLDAAREEISELQAQVV
ELSGVEDELREAFKELRRYRKRGVDEGHKDDREGVHSGDRGPGKKEDAEG
LRAVATVTAAAKAVEEELREQLEAKDEALRYVENELLGMKPLFEGKEALL
RQELGSERDKLAKEAKEWKRRAEEAATRRSATEAS*
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