prot_H-elongata_contig63965.13983.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63965.13983.1
Unique Nameprot_H-elongata_contig63965.13983.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length132
Homology
BLAST of mRNA_H-elongata_contig63965.13983.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.330e-22
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 0
Query:    5 DDFTRFKMVHFLKYKSDATNTLRDIINDYFA-LEGLKIGVIRTDGGGEWHGQFLSFLSKLGIKRESTPPYTPQYNDVVERALGLLRNKTVALLRGVRK-----GKSNRLWAEAMAYACDMWNRCTSSSLDSG 130
            DD TR+  V FLK+KSDA       + DY A     ++ V RTDGGGE+ GQF     + GIK+E TPP TP+YN V ERALGLL +  +A     ++       S  LWAEA++ AC   N CT+++ + G
Sbjct:   17 DDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPG 147          
BLAST of mRNA_H-elongata_contig63965.13983.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.710e-21
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 0
Query:    5 DDFTRFKMVHFLKYKSDATNTLRDIINDYFA-LEGLKIGVIRTDGGGEWHGQFLSFLSKLGIKRESTPPYTPQYNDVVERALGLLRNKTVALLRGVRK-----GKSNRLWAEAMAYACDMWNRCTSSSLDSG 130
            DD TR+  V FLK+KSDA       + DY A     ++ V RTDGGGE+ GQF     + GIK+E TPP TP+YN V ERALGLL +  +A     ++       S  LWAEA++ AC   N CT+++ + G
Sbjct:  221 DDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPG 351          
BLAST of mRNA_H-elongata_contig63965.13983.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.810e-20
Identity = 54/127 (42.52%), Postives = 75/127 (59.06%), Query Frame = 0
Query:    5 DDFTRFKMVHFLKYKSDATNTLRDIINDYFALE-GLKIGVIRTDGGGEWHGQFLSFLSKLGIKRESTPPYTPQYNDVVERALGLLRNKTVALLRGVRKGKSNR-----LWAEAMAYACDMWNRCTSS 125
            DDF+R+  V FLK+KSDA       + DY   E   ++ + RTD GGE+ GQF     + GIK+E TPP+TP+YNDV ERALGL+ +  +A      +   +      LWAEA++ AC   N CT++
Sbjct:  242 DDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGLITDAALASRIQATQPFPDAPNHPGLWAEAISCACHQLN-CTAT 367          
BLAST of mRNA_H-elongata_contig63965.13983.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.400e-20
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    1 MLCIDDFTRFKMVHFLKYKSDATNTLRDIINDYFALEGLK--IGVIRTDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNDVVERALGLLRNKTVA-------LLRGVRKGKSNRLWAEAMAYACDMWNRCTSSS 126
            M+  DDFTR   ++FLK K DA +  R  +    A +G+   + ++R+D GGE+ G +F S  ++L IK+E TP Y+PQYN V ER LGL+    +A       L   V+  K++RLWAEAM +AC+  N    S+
Sbjct:    1 MIVKDDFTRRTWMYFLKSKPDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSA 135          
BLAST of mRNA_H-elongata_contig63965.13983.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.930e-20
Identity = 55/133 (41.35%), Postives = 77/133 (57.89%), Query Frame = 0
Query:    5 DDFTRFKMVHFLKYKSDATNTLRDIINDYFALEGL--KIGVIRTDGGGEWHGQFLSFLSKLGIKRESTPPYTPQYNDVVERALGLLRNKTVALLRGVRK-----GKSNRLWAEAMAYACDMWNRCTSSSLDSG 130
            DDF+R+  V FLK+KSDA       + DY   +G+  ++ + RTDGGGE+ GQF     + GIK E TPP+TP+YN V ERALGL+ +  +A      +          LWAEA++ AC   N CT++  + G
Sbjct:   48 DDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLN-CTATKSNEG 178          
BLAST of mRNA_H-elongata_contig63965.13983.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.240e-20
Identity = 58/136 (42.65%), Postives = 78/136 (57.35%), Query Frame = 0
Query:    5 DDFTRFKMVHFLKYKSDATNTLRDIINDYFALEGL--KIGVIRTDGGGEWHGQFLSFLSKLGIKRESTPPYTPQYNDVVERALGLLRNKTVALLRGVRKGKS--------NRLWAEAMAYACDMWNRCTSSSLDSG 130
            DDF+R+  V FLK+KSDA   L   + DY   +G+  ++ + RTDGGGE+ GQF     + GIK+E TPP+TP+YN V ERALG L   T A L    +             LWAEA++ AC   N CT++  + G
Sbjct:  672 DDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLN-CTATKSNEG 805          
BLAST of mRNA_H-elongata_contig63965.13983.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.950e-20
Identity = 56/136 (41.18%), Postives = 81/136 (59.56%), Query Frame = 0
Query:    1 MLCIDDFTRFKMVHFLKYKSDATNTLRDIINDYFALEGLK--IGVIRTDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNDVVERALGLLRNKTVA-------LLRGVRKGKSNRLWAEAMAYACDMWNRCTSSS 126
            M+  DDFTR   ++FLK KSDA +  R  +    A +G+   + ++R+D GGE+ G +F S  ++L IK+E TP Y+PQYN V ER LGL+    +A       L   V+  K++RLWAEAM +AC+  N    S+
Sbjct:  653 MIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSA 787          
BLAST of mRNA_H-elongata_contig63965.13983.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.750e-20
Identity = 55/136 (40.44%), Postives = 81/136 (59.56%), Query Frame = 0
Query:    1 MLCIDDFTRFKMVHFLKYKSDATNTLRDIINDYFALEGLK--IGVIRTDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNDVVERALGLLRNKTVA-------LLRGVRKGKSNRLWAEAMAYACDMWNRCTSSS 126
            M+  DDFTR   ++FLK+KSDA    R  +    A +G+   + ++R+D GGE+ G +F S  ++L IK+E TP Y+PQYN V ER LGL+    +A       L   V+  K+++LWAEAM +AC+  N    S+
Sbjct:  257 MIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSA 391          
BLAST of mRNA_H-elongata_contig63965.13983.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.780e-20
Identity = 55/136 (40.44%), Postives = 81/136 (59.56%), Query Frame = 0
Query:    1 MLCIDDFTRFKMVHFLKYKSDATNTLRDIINDYFALEGLK--IGVIRTDGGGEWHG-QFLSFLSKLGIKRESTPPYTPQYNDVVERALGLLRNKTVA-------LLRGVRKGKSNRLWAEAMAYACDMWNRCTSSS 126
            M+  DDFTR   ++FLK+KSDA    R  +    A +G+   + ++R+D GGE+ G +F S  ++L IK+E TP Y+PQYN V ER LGL+    +A       L   V+  K+++LWAEAM +AC+  N    S+
Sbjct:  454 MIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSA 588          
BLAST of mRNA_H-elongata_contig63965.13983.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.350e-19
Identity = 55/133 (41.35%), Postives = 76/133 (57.14%), Query Frame = 0
Query:    5 DDFTRFKMVHFLKYKSDATNTLRDIINDYFALEGL--KIGVIRTDGGGEWHGQFLSFLSKLGIKRESTPPYTPQYNDVVERALGLLRNKTVALLRGVRK-----GKSNRLWAEAMAYACDMWNRCTSSSLDSG 130
            DDF+R+  V FLK+KSDA       + DY   EG+  K+ + RTDGGGE+ GQF     + GIK+E TPP+TP Y DV ERALGL+ +  +A      +          LWAEA++ AC    +C ++  + G
Sbjct:  508 DDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQL-KCIATKSNEG 638          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63965.13983.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKB4_9PHAE5.330e-2243.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE2.710e-2143.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGJ8_9PHAE1.810e-2042.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWE4_9PHAE4.400e-2040.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM7_9PHAE4.930e-2041.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE5.240e-2042.65Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K2M6_9PHAE6.950e-2041.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBA7_9PHAE9.750e-2040.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE9.780e-2040.44Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPZ8_9PHAE2.350e-1941.35Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 3..91
e-value: 6.8E-11
score: 42.4
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..131
score: 14.891
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..129
e-value: 2.5E-15
score: 58.2
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63965contigH-elongata_contig63965:1507..1902 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63965.13983.1mRNA_H-elongata_contig63965.13983.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63965 1312..1917 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63965.13983.1 ID=prot_H-elongata_contig63965.13983.1|Name=mRNA_H-elongata_contig63965.13983.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MLCIDDFTRFKMVHFLKYKSDATNTLRDIINDYFALEGLKIGVIRTDGGG
EWHGQFLSFLSKLGIKRESTPPYTPQYNDVVERALGLLRNKTVALLRGVR
KGKSNRLWAEAMAYACDMWNRCTSSSLDSGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf